顺磁核磁共振研究铁硫蛋白:13C检测实验照亮了金属中心附近。

IF 1.3 3区 生物学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY
Leonardo Querci, Deborah Grifagni, Inês B. Trindade, José Malanho Silva, Ricardo O. Louro, Francesca Cantini, Mario Piccioli
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引用次数: 0

摘要

核磁共振相干转移在顺磁性中心附近的稳健性取决于所涉及的原子核的弛豫性质。在铁硫蛋白的情况下,不同的脉冲方案或不同的参数集通常提供互补的结果。HCACO和CACO实验的定制版本通过恢复由于顺磁弛豫而丢失的许多共振,显著增加了在高度顺磁系统中观察到的Cα/C'连接性的数量。优化的13C直接检测实验可以显著扩展可用的分配,提高这些系统的整体知识。在CACO和COCA实验中利用了Cα和C’核的不同弛豫特性,并利用两个实验的互补性来获得结构信息。以含有NEET蛋白CISD3的两个[Fe2S2]+簇和含有HiPIP蛋白PioC的一个[Fe4S4]2+簇为模型系统。我们表明,量身定制的实验有助于减少簇周围的盲球,扩展簇结合半胱氨酸残基的共振分配,并检索铁结合配体残基的拓扑结构细节。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

Paramagnetic NMR to study iron sulfur proteins: 13C detected experiments illuminate the vicinity of the metal center

Paramagnetic NMR to study iron sulfur proteins: 13C detected experiments illuminate the vicinity of the metal center

The robustness of NMR coherence transfer in proximity of a paramagnetic center depends on the relaxation properties of the nuclei involved. In the case of Iron-Sulfur Proteins, different pulse schemes or different parameter sets often provide complementary results. Tailored versions of HCACO and CACO experiments significantly increase the number of observed Cα/C’ connectivities in highly paramagnetic systems, by recovering many resonances that were lost due to paramagnetic relaxation. Optimized 13C direct detected experiments can significantly extend the available assignments, improving the overall knowledge of these systems. The different relaxation properties of Cα and C’ nuclei are exploited in CACO vs COCA experiments and the complementarity of the two experiments is used to obtain structural information. The two [Fe2S2]+ clusters containing NEET protein CISD3 and the one [Fe4S4]2+ cluster containing HiPIP protein PioC have been taken as model systems. We show that tailored experiments contribute to decrease the blind sphere around the cluster, to extend resonance assignment of cluster bound cysteine residues and to retrieve details on the topology of the iron-bound ligand residues.

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来源期刊
Journal of Biomolecular NMR
Journal of Biomolecular NMR 生物-光谱学
CiteScore
6.00
自引率
3.70%
发文量
19
审稿时长
6-12 weeks
期刊介绍: The Journal of Biomolecular NMR provides a forum for publishing research on technical developments and innovative applications of nuclear magnetic resonance spectroscopy for the study of structure and dynamic properties of biopolymers in solution, liquid crystals, solids and mixed environments, e.g., attached to membranes. This may include: Three-dimensional structure determination of biological macromolecules (polypeptides/proteins, DNA, RNA, oligosaccharides) by NMR. New NMR techniques for studies of biological macromolecules. Novel approaches to computer-aided automated analysis of multidimensional NMR spectra. Computational methods for the structural interpretation of NMR data, including structure refinement. Comparisons of structures determined by NMR with those obtained by other methods, e.g. by diffraction techniques with protein single crystals. New techniques of sample preparation for NMR experiments (biosynthetic and chemical methods for isotope labeling, preparation of nutrients for biosynthetic isotope labeling, etc.). An NMR characterization of the products must be included.
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