用于罕见事件采样的条件Boltzmann发生器

IF 6.3 2区 物理与天体物理 Q1 COMPUTER SCIENCE, ARTIFICIAL INTELLIGENCE
S. Falkner, Alessandro Coretti, Salvatore Romano, P. Geissler, C. Dellago
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引用次数: 1

摘要

了解复杂分子过程的动力学通常与研究长寿命稳定状态之间的罕见跃迁有关。对这种罕见事件进行采样的标准方法是使用轨迹空间中的随机行走生成过渡路径集合。然而,这带来了随后采样的路径之间的强相关性的缺点,以及并行化采样过程的内在困难。我们提出了一种基于神经网络生成配置的过渡路径采样方案。这些是使用归一化流获得的,归一化流是一种能够从给定分布中生成统计独立样本的神经网络类。使用这种方法,不仅消除了访问路径之间的相关性,而且采样过程变得容易并行。此外,通过调节归一化流,可以将配置的采样导向感兴趣的区域。我们表明,对于可以使用精确似然生成模型采样的系统,这种方法能够同时解析过渡区的热力学和动力学。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Conditioning Boltzmann generators for rare event sampling
Understanding the dynamics of complex molecular processes is often linked to the study of infrequent transitions between long-lived stable states. The standard approach to the sampling of such rare events is to generate an ensemble of transition paths using a random walk in trajectory space. This, however, comes with the drawback of strong correlations between subsequently sampled paths and with an intrinsic difficulty in parallelizing the sampling process. We propose a transition path sampling scheme based on neural-network generated configurations. These are obtained employing normalizing flows, a neural network class able to generate statistically independent samples from a given distribution. With this approach, not only are correlations between visited paths removed, but the sampling process becomes easily parallelizable. Moreover, by conditioning the normalizing flow, the sampling of configurations can be steered towards regions of interest. We show that this approach enables the resolution of both the thermodynamics and kinetics of the transition region for systems that can be sampled using exact-likelihood generative models.
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来源期刊
Machine Learning Science and Technology
Machine Learning Science and Technology Computer Science-Artificial Intelligence
CiteScore
9.10
自引率
4.40%
发文量
86
审稿时长
5 weeks
期刊介绍: Machine Learning Science and Technology is a multidisciplinary open access journal that bridges the application of machine learning across the sciences with advances in machine learning methods and theory as motivated by physical insights. Specifically, articles must fall into one of the following categories: advance the state of machine learning-driven applications in the sciences or make conceptual, methodological or theoretical advances in machine learning with applications to, inspiration from, or motivated by scientific problems.
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