通过高维质子探测固态核磁共振表征构象非均质性

IF 16.4 1区 化学 Q1 CHEMISTRY, MULTIDISCIPLINARY
Ekaterina Burakova, Suresh K. Vasa, Rasmus Linser
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引用次数: 0

摘要

固体蛋白质样品的位点特异性异质性可以作为有价值的信息来回答生物学问题,从决定纤维形成的热力学性质到蛋白质折叠和应激下的构象稳定性。特别是,对于分子量增加的蛋白质,然而,没有残基特异性标记的位点分辨评估是具有挑战性的,使用既定的方法往往依赖于碳检测的二维相关性。在这里,我们开发了纯粹基于化学位移的方法来评估相对构象异质性,允许通过四个化学位移维度识别每个残留物。高维减少了存在多个非均匀加宽共振时峰重叠的概率。通过适当的预测程序或直接与关系数据库相关联,利用从个体贡献到峰形状的主干二面角重构,该方法可能在未来的研究中提供无需位点特异性标记的蛋白质位点特异性异质性评估。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

Characterization of conformational heterogeneity via higher-dimensionality, proton-detected solid-state NMR

Characterization of conformational heterogeneity via higher-dimensionality, proton-detected solid-state NMR

Site-specific heterogeneity of solid protein samples can be exploited as valuable information to answer biological questions ranging from thermodynamic properties determining fibril formation to protein folding and conformational stability upon stress. In particular, for proteins of increasing molecular weight, however, site-resolved assessment without residue-specific labeling is challenging using established methodology, which tends to rely on carbon-detected 2D correlations. Here we develop purely chemical-shift-based approaches for assessment of relative conformational heterogeneity that allows identification of each residue via four chemical-shift dimensions. High dimensionality diminishes the probability of peak overlap in the presence of multiple, heterogeneously broadened resonances. Utilizing backbone dihedral-angle reconstruction from individual contributions to the peak shape either via suitably adapted prediction routines or direct association with a relational database, the methods may in future studies afford assessment of site-specific heterogeneity of proteins without site-specific labeling.

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来源期刊
Accounts of Chemical Research
Accounts of Chemical Research 化学-化学综合
CiteScore
31.40
自引率
1.10%
发文量
312
审稿时长
2 months
期刊介绍: Accounts of Chemical Research presents short, concise and critical articles offering easy-to-read overviews of basic research and applications in all areas of chemistry and biochemistry. These short reviews focus on research from the author’s own laboratory and are designed to teach the reader about a research project. In addition, Accounts of Chemical Research publishes commentaries that give an informed opinion on a current research problem. Special Issues online are devoted to a single topic of unusual activity and significance. Accounts of Chemical Research replaces the traditional article abstract with an article "Conspectus." These entries synopsize the research affording the reader a closer look at the content and significance of an article. Through this provision of a more detailed description of the article contents, the Conspectus enhances the article's discoverability by search engines and the exposure for the research.
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