高分辨率弛豫测量法对溶液中蛋白质内部动力学的影响有多大?

IF 1.3 3区 生物学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY
Albert A. Smith, Nicolas Bolik-Coulon, Matthias Ernst, Beat H. Meier, Fabien Ferrage
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引用次数: 8

摘要

溶液中分子的动力学通常通过确定运动的时间尺度特定振幅来量化。高分辨率核磁共振(NMR)弛豫测量实验——将样品转移到低场进行纵向(T1)弛豫,然后返回高场进行残留物特定分辨率的检测——旨在提高在慢于几纳秒的时间尺度上区分运动贡献的能力。然而,分子在溶液中的翻滚掩盖了其中的一些运动。因此,我们研究松弛测量法在多大程度上提高了时间尺度分辨率,使用“探测器”动力学分析。在这里,我们证明了在小蛋白泛素中通过碳-13弛豫测定来表征含甲基侧链的内部动力学的改进。我们表明,与仅使用高场弛豫数据相比,弛豫数据可以提供关于纳秒运动的更好信息。我们的计算表明,随着旋转扩散相关时间的增加,弛豫测量的增益更大。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

How wide is the window opened by high-resolution relaxometry on the internal dynamics of proteins in solution?

How wide is the window opened by high-resolution relaxometry on the internal dynamics of proteins in solution?

The dynamics of molecules in solution is usually quantified by the determination of timescale-specific amplitudes of motions. High-resolution nuclear magnetic resonance (NMR) relaxometry experiments—where the sample is transferred to low fields for longitudinal (T1) relaxation, and back to high field for detection with residue-specific resolution—seeks to increase the ability to distinguish the contributions from motion on timescales slower than a few nanoseconds. However, tumbling of a molecule in solution masks some of these motions. Therefore, we investigate to what extent relaxometry improves timescale resolution, using the “detector” analysis of dynamics. Here, we demonstrate improvements in the characterization of internal dynamics of methyl-bearing side chains by carbon-13 relaxometry in the small protein ubiquitin. We show that relaxometry data leads to better information about nanosecond motions as compared to high-field relaxation data only. Our calculations show that gains from relaxometry are greater with increasing correlation time of rotational diffusion.

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来源期刊
Journal of Biomolecular NMR
Journal of Biomolecular NMR 生物-光谱学
CiteScore
6.00
自引率
3.70%
发文量
19
审稿时长
6-12 weeks
期刊介绍: The Journal of Biomolecular NMR provides a forum for publishing research on technical developments and innovative applications of nuclear magnetic resonance spectroscopy for the study of structure and dynamic properties of biopolymers in solution, liquid crystals, solids and mixed environments, e.g., attached to membranes. This may include: Three-dimensional structure determination of biological macromolecules (polypeptides/proteins, DNA, RNA, oligosaccharides) by NMR. New NMR techniques for studies of biological macromolecules. Novel approaches to computer-aided automated analysis of multidimensional NMR spectra. Computational methods for the structural interpretation of NMR data, including structure refinement. Comparisons of structures determined by NMR with those obtained by other methods, e.g. by diffraction techniques with protein single crystals. New techniques of sample preparation for NMR experiments (biosynthetic and chemical methods for isotope labeling, preparation of nutrients for biosynthetic isotope labeling, etc.). An NMR characterization of the products must be included.
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