SBML 3级软件包:空间过程,版本1,发行版1

IF 1.5 Q3 MATHEMATICAL & COMPUTATIONAL BIOLOGY
J. Schaff, Anuradha Lakshminarayana, Robert F. Murphy, Frank T. Bergmann, Akira Funahashi, Devin P. Sullivan, Lucian P. Smith
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引用次数: 2

摘要

摘要虽然许多生物过程可以通过抽象出这些过程发生的空间来建模,但一些建模(特别是在细胞水平上)需要对空间本身进行建模,过程不是在混合良好的隔间中发生的,而是在空间上定义的隔间中。SBML Level 3 Core规范不包括对模型中的几何结构和空间过程进行编码的显式机制,但它确实为SBML包提供了一种机制,以扩展Core规范并添加额外的语法结构。SBML Level 3的SBML Spatial Processes软件包添加了必要的功能,允许模型对几何图形和其他有关其描述的元素和过程的空间信息进行编码。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
SBML level 3 package: spatial processes, version 1, release 1
Abstract While many biological processes can be modeled by abstracting away the space in which those processes occur, some modeling (particularly at the cellular level) requires space itself to be modeled, with processes happening not in well-mixed compartments, but spatially-defined compartments. The SBML Level 3 Core specification does not include an explicit mechanism to encode geometries and spatial processes in a model, but it does provide a mechanism for SBML packages to extend the Core specification and add additional syntactic constructs. The SBML Spatial Processes package for SBML Level 3 adds the necessary features to allow models to encode geometries and other spatial information about the elements and processes it describes.
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来源期刊
Journal of Integrative Bioinformatics
Journal of Integrative Bioinformatics Medicine-Medicine (all)
CiteScore
3.10
自引率
5.30%
发文量
27
审稿时长
12 weeks
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