人工智能方法鉴定甲基糖苷抗心肌梗死差异表达基因

IF 1.8 Q3 PHARMACOLOGY & PHARMACY
Sreya Kosanam, Rajeshwari Pasupula
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引用次数: 0

摘要

利用人工智能(AI)方法从传统植物中预测治疗心肌梗塞的小分子靶标。在这项研究中,我们使用了不同的网络服务器和软件来预测相关植物小分子的靶点。我们对 Aganosma dichotoma 的甲醇提取物进行了筛选,并通过气相色谱-质谱分析确认了小分子的存在。在这项研究中,甲基 beta d-xylopyranoside 是一种甲基苷,被鉴定为小分子(164.16 gms/mol)。甲基糖苷的药代动力学和毒性预测结果表明,其生物利用度良好,符合 Lipinki 的五项规则,半数致死剂量≥ 5000 毫克/千克。从数据集中确定了差异表达基因,并对重叠基因进行了基因富集分析通路评估(p < 0.05)。构建了一个 PPI 网络,并确定了枢纽基因。通过 DPPH 和 ABTS 分析,体外抗氧化活性验证了小分子的抗氧化效力,据报道,小分子 DPPH 和 ABTS 活性在 0.1 μM/ml 和 0.5 μM/ml 浓度下的 IC50 值分别为 51.09%、80.67% 和 48.41%、90.19%。小分子甲基 beta d-xylopyranoside 是一种强有力的抗氧化剂,可能对缺血和自由基生成引起的心肌梗死有作用,但还需要通过进一步的体内研究来验证。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Artificial intelligence approach in identification of differentially expressed genes of methyl glycoside against myocardial infarction

To predict the targets of small molecules from traditional plants using an artificial intelligence (AI) approach for myocardial infarction. In this study, we used different web servers and software to predict the targets of small molecule from plant of interest. The methanolic extract of Aganosma dichotoma was screened and the presence of small molecules was confirmed by GC–MS analysis. In this study, Methyl beta d-xylopyranoside is a Methyl glycoside, which was identified as a small molecule (164.16 gms/mol). Pharmacokinetic and toxicity prediction of methyl glycoside showed good bioavailability, accepting the five rules of Lipinki and LD50 ≥ 5000 mg/kg. Differentially expressed genes were identified from the datasets and overlapping genes were assessed for gene enrichment analysis pathways with p < 0.05. A PPI network was constructed and hub genes were identified. Anti-oxidant potency of small molecule is validated through in-vitro anti-oxidant activity through DPPH and ABTS analysis where, small molecule DPPH, ABTS activity was reported to have an IC50 value of 51.09%, 80.67% and 48.41%, 90.19% at 0.1 μM/ml, 0.5 μM/ml concentrations respectively. The small molecule methyl beta d-xylopyranoside is a robust antioxidant that may act against myocardial infarction caused by ischemia and free radical generation, but needs to be validated through further in vivo studies.

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来源期刊
Advances in Traditional Medicine
Advances in Traditional Medicine PHARMACOLOGY & PHARMACY-
CiteScore
4.30
自引率
0.00%
发文量
50
期刊介绍: Advances in Traditional Medicine (ADTM) is an international and peer-reviewed journal and publishes a variety of articles including original researches, reviews, short communications, and case-reports. ADTM aims to bridging the gap between Traditional knowledge and medical advances. The journal focuses on publishing valid, relevant, and rigorous experimental research and clinical applications of Traditidnal Medicine as well as medical classics. At the same time, the journal is devoted to communication among basic researcher and medical clinician interested in the advancement of Traditional Medicine. Topics covered by the journal are: Medical Classics & History; Biomedical Research; Pharmacology & Toxicology of Natural Products; Acupuncture & Moxibustion; Sasang Constitutional Medicine; Diagnostics and Instrumental Development; Clinical Research. ADTM is published four times yearly. The publication date of this journal is 30th March, June, September, and December.
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