{"title":"人工智能方法鉴定甲基糖苷抗心肌梗死差异表达基因","authors":"Sreya Kosanam, Rajeshwari Pasupula","doi":"10.1007/s13596-023-00691-5","DOIUrl":null,"url":null,"abstract":"<div><p>To predict the targets of small molecules from traditional plants using an artificial intelligence (AI) approach for myocardial infarction. In this study, we used different web servers and software to predict the targets of small molecule from plant of interest. The methanolic extract of <i>Aganosma dichotoma</i> was screened and the presence of small molecules was confirmed by GC–MS analysis. In this study, Methyl beta <span>d</span>-xylopyranoside is a Methyl glycoside, which was identified as a small molecule (164.16 gms/mol). Pharmacokinetic and toxicity prediction of methyl glycoside showed good bioavailability, accepting the five rules of Lipinki and LD50 ≥ 5000 mg/kg. Differentially expressed genes were identified from the datasets and overlapping genes were assessed for gene enrichment analysis pathways with <i>p</i> < 0.05. A PPI network was constructed and hub genes were identified. Anti-oxidant potency of small molecule is validated through in-vitro anti-oxidant activity through DPPH and ABTS analysis where, small molecule DPPH, ABTS activity was reported to have an IC50 value of 51.09%, 80.67% and 48.41%, 90.19% at 0.1 μM/ml, 0.5 μM/ml concentrations respectively. The small molecule methyl beta <span>d</span>-xylopyranoside is a robust antioxidant that may act against myocardial infarction caused by ischemia and free radical generation, but needs to be validated through further in vivo studies.</p></div>","PeriodicalId":7613,"journal":{"name":"Advances in Traditional Medicine","volume":"24 1","pages":"243 - 252"},"PeriodicalIF":1.8000,"publicationDate":"2023-07-10","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Artificial intelligence approach in identification of differentially expressed genes of methyl glycoside against myocardial infarction\",\"authors\":\"Sreya Kosanam, Rajeshwari Pasupula\",\"doi\":\"10.1007/s13596-023-00691-5\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<div><p>To predict the targets of small molecules from traditional plants using an artificial intelligence (AI) approach for myocardial infarction. In this study, we used different web servers and software to predict the targets of small molecule from plant of interest. The methanolic extract of <i>Aganosma dichotoma</i> was screened and the presence of small molecules was confirmed by GC–MS analysis. In this study, Methyl beta <span>d</span>-xylopyranoside is a Methyl glycoside, which was identified as a small molecule (164.16 gms/mol). Pharmacokinetic and toxicity prediction of methyl glycoside showed good bioavailability, accepting the five rules of Lipinki and LD50 ≥ 5000 mg/kg. Differentially expressed genes were identified from the datasets and overlapping genes were assessed for gene enrichment analysis pathways with <i>p</i> < 0.05. A PPI network was constructed and hub genes were identified. Anti-oxidant potency of small molecule is validated through in-vitro anti-oxidant activity through DPPH and ABTS analysis where, small molecule DPPH, ABTS activity was reported to have an IC50 value of 51.09%, 80.67% and 48.41%, 90.19% at 0.1 μM/ml, 0.5 μM/ml concentrations respectively. The small molecule methyl beta <span>d</span>-xylopyranoside is a robust antioxidant that may act against myocardial infarction caused by ischemia and free radical generation, but needs to be validated through further in vivo studies.</p></div>\",\"PeriodicalId\":7613,\"journal\":{\"name\":\"Advances in Traditional Medicine\",\"volume\":\"24 1\",\"pages\":\"243 - 252\"},\"PeriodicalIF\":1.8000,\"publicationDate\":\"2023-07-10\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Advances in Traditional Medicine\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://link.springer.com/article/10.1007/s13596-023-00691-5\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q3\",\"JCRName\":\"PHARMACOLOGY & PHARMACY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Advances in Traditional Medicine","FirstCategoryId":"1085","ListUrlMain":"https://link.springer.com/article/10.1007/s13596-023-00691-5","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q3","JCRName":"PHARMACOLOGY & PHARMACY","Score":null,"Total":0}
Artificial intelligence approach in identification of differentially expressed genes of methyl glycoside against myocardial infarction
To predict the targets of small molecules from traditional plants using an artificial intelligence (AI) approach for myocardial infarction. In this study, we used different web servers and software to predict the targets of small molecule from plant of interest. The methanolic extract of Aganosma dichotoma was screened and the presence of small molecules was confirmed by GC–MS analysis. In this study, Methyl beta d-xylopyranoside is a Methyl glycoside, which was identified as a small molecule (164.16 gms/mol). Pharmacokinetic and toxicity prediction of methyl glycoside showed good bioavailability, accepting the five rules of Lipinki and LD50 ≥ 5000 mg/kg. Differentially expressed genes were identified from the datasets and overlapping genes were assessed for gene enrichment analysis pathways with p < 0.05. A PPI network was constructed and hub genes were identified. Anti-oxidant potency of small molecule is validated through in-vitro anti-oxidant activity through DPPH and ABTS analysis where, small molecule DPPH, ABTS activity was reported to have an IC50 value of 51.09%, 80.67% and 48.41%, 90.19% at 0.1 μM/ml, 0.5 μM/ml concentrations respectively. The small molecule methyl beta d-xylopyranoside is a robust antioxidant that may act against myocardial infarction caused by ischemia and free radical generation, but needs to be validated through further in vivo studies.
期刊介绍:
Advances in Traditional Medicine (ADTM) is an international and peer-reviewed journal and publishes a variety of articles including original researches, reviews, short communications, and case-reports. ADTM aims to bridging the gap between Traditional knowledge and medical advances. The journal focuses on publishing valid, relevant, and rigorous experimental research and clinical applications of Traditidnal Medicine as well as medical classics. At the same time, the journal is devoted to communication among basic researcher and medical clinician interested in the advancement of Traditional Medicine. Topics covered by the journal are: Medical Classics & History; Biomedical Research; Pharmacology & Toxicology of Natural Products; Acupuncture & Moxibustion; Sasang Constitutional Medicine; Diagnostics and Instrumental Development; Clinical Research. ADTM is published four times yearly. The publication date of this journal is 30th March, June, September, and December.