{"title":"博物馆贝壳馆藏的历史DNA:评估干燥小软体动物分子系统学的适用性","authors":"Tricia C Goulding, Norine W. Yeung, K. Hayes","doi":"10.4003/006.038.0209","DOIUrl":null,"url":null,"abstract":"Abstract: Natural history collections are an invaluable resource that can inform systematic studies and biodiversity discovery, and also contribute to understanding changes in species abundance and distributions over time. The decline in abundance and diversity of Pacific Island land snails has been a major conservation concern for more than six decades, but only the largest and most colorful snails are protected under the US Endangered Species act, and few are listed as critically endangered on the IUCN Red List. Like most invertebrates, the conservation status of many Hawaiian land snails still need assessment. Molecular data are highly informative for revising species limits and understanding evolutionary patterns and processes, but with as much as 70% of Hawaiian land snails already extinct, few fresh samples are available from which to extract DNA. To overcome the lack of material suitable for DNA barcoding, we test whether short DNA fragments of 225 to 355 bp can be sequenced from museum snail shells containing dried tissues collected more than 50 years ago. Short DNA sequences (225 bp) were obtained from 66.7% of lots, while longer DNA sequences (355 bp) were successfully sequenced from 24.2% of lots. Snail specimens stored in natural history cabinets for more than 100 years were successfully sequenced, supporting the inclusion of these materials for modern biodiversity studies. Molecular data from this study represents a small proportion of Hawaiian microsnail species housed among the millions of specimens in the Bishop Museum in Hawaii and other natural history collections. Additional resources and focused efforts are needed to scale this approach to incorporate many more of the hundreds of snail species in need of assessment in Hawaii. More broadly, there are large representative collections of endangered Pacific Island non-marine snails in many natural history museums that may be suitable for molecular work, either with DNA barcoding or other genomic approaches.","PeriodicalId":7779,"journal":{"name":"American Malacological Bulletin","volume":"38 1","pages":"129 - 135"},"PeriodicalIF":0.4000,"publicationDate":"2021-12-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"2","resultStr":"{\"title\":\"Historical DNA from Museum Shell Collections: Evaluating the Suitability of Dried Micromollusks for Molecular Systematics\",\"authors\":\"Tricia C Goulding, Norine W. Yeung, K. Hayes\",\"doi\":\"10.4003/006.038.0209\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"Abstract: Natural history collections are an invaluable resource that can inform systematic studies and biodiversity discovery, and also contribute to understanding changes in species abundance and distributions over time. The decline in abundance and diversity of Pacific Island land snails has been a major conservation concern for more than six decades, but only the largest and most colorful snails are protected under the US Endangered Species act, and few are listed as critically endangered on the IUCN Red List. Like most invertebrates, the conservation status of many Hawaiian land snails still need assessment. Molecular data are highly informative for revising species limits and understanding evolutionary patterns and processes, but with as much as 70% of Hawaiian land snails already extinct, few fresh samples are available from which to extract DNA. To overcome the lack of material suitable for DNA barcoding, we test whether short DNA fragments of 225 to 355 bp can be sequenced from museum snail shells containing dried tissues collected more than 50 years ago. Short DNA sequences (225 bp) were obtained from 66.7% of lots, while longer DNA sequences (355 bp) were successfully sequenced from 24.2% of lots. Snail specimens stored in natural history cabinets for more than 100 years were successfully sequenced, supporting the inclusion of these materials for modern biodiversity studies. Molecular data from this study represents a small proportion of Hawaiian microsnail species housed among the millions of specimens in the Bishop Museum in Hawaii and other natural history collections. Additional resources and focused efforts are needed to scale this approach to incorporate many more of the hundreds of snail species in need of assessment in Hawaii. More broadly, there are large representative collections of endangered Pacific Island non-marine snails in many natural history museums that may be suitable for molecular work, either with DNA barcoding or other genomic approaches.\",\"PeriodicalId\":7779,\"journal\":{\"name\":\"American Malacological Bulletin\",\"volume\":\"38 1\",\"pages\":\"129 - 135\"},\"PeriodicalIF\":0.4000,\"publicationDate\":\"2021-12-16\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"2\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"American Malacological Bulletin\",\"FirstCategoryId\":\"99\",\"ListUrlMain\":\"https://doi.org/10.4003/006.038.0209\",\"RegionNum\":4,\"RegionCategory\":\"生物学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q4\",\"JCRName\":\"MARINE & FRESHWATER BIOLOGY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"American Malacological Bulletin","FirstCategoryId":"99","ListUrlMain":"https://doi.org/10.4003/006.038.0209","RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q4","JCRName":"MARINE & FRESHWATER BIOLOGY","Score":null,"Total":0}
Historical DNA from Museum Shell Collections: Evaluating the Suitability of Dried Micromollusks for Molecular Systematics
Abstract: Natural history collections are an invaluable resource that can inform systematic studies and biodiversity discovery, and also contribute to understanding changes in species abundance and distributions over time. The decline in abundance and diversity of Pacific Island land snails has been a major conservation concern for more than six decades, but only the largest and most colorful snails are protected under the US Endangered Species act, and few are listed as critically endangered on the IUCN Red List. Like most invertebrates, the conservation status of many Hawaiian land snails still need assessment. Molecular data are highly informative for revising species limits and understanding evolutionary patterns and processes, but with as much as 70% of Hawaiian land snails already extinct, few fresh samples are available from which to extract DNA. To overcome the lack of material suitable for DNA barcoding, we test whether short DNA fragments of 225 to 355 bp can be sequenced from museum snail shells containing dried tissues collected more than 50 years ago. Short DNA sequences (225 bp) were obtained from 66.7% of lots, while longer DNA sequences (355 bp) were successfully sequenced from 24.2% of lots. Snail specimens stored in natural history cabinets for more than 100 years were successfully sequenced, supporting the inclusion of these materials for modern biodiversity studies. Molecular data from this study represents a small proportion of Hawaiian microsnail species housed among the millions of specimens in the Bishop Museum in Hawaii and other natural history collections. Additional resources and focused efforts are needed to scale this approach to incorporate many more of the hundreds of snail species in need of assessment in Hawaii. More broadly, there are large representative collections of endangered Pacific Island non-marine snails in many natural history museums that may be suitable for molecular work, either with DNA barcoding or other genomic approaches.
期刊介绍:
The American Malacological Bulletin serves as an outlet for reporting notable contributions in malacological research. Manuscripts concerning any aspect of original, unpublished research,important short reports, and detailed reviews dealing with molluscs will be considered for publication. Recent issues have included AMS symposia, independent papers, research notes,and book reviews. All published research articles in this journal have undergone rigorous peer review, based on initial editor screening and anonymous reviewing by independent expertreferees. AMS symposium papers have undergone peer review by symposium organizer, symposium participants, and independent referees.