臭氧胁迫反应基因数据库(OSRGD版本1.1):一个文献策划的数据库,用于深入了解植物对臭氧胁迫的反应

IF 2.2 Q3 GENETICS & HEREDITY
Prachi Yadav, Usha Mina
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引用次数: 1

摘要

臭氧(O3)是严重影响植物生长发育的主要非生物胁迫。为了应对臭氧胁迫,植物表现出大量的形态、生理和分子变化。已经进行了各种分子研究,并确定了在臭氧胁迫下表现出表达的各种基因。然而,目前还没有设计数据库来提供臭氧胁迫响应基因在不同植物物种间差异表达的信息。缺乏一个有组织的数据库限制了该领域的研究潜力,因此应该设计一个有凝聚力的数据库作为臭氧反应基因的数据储存库。OSRGD版本。1.1是一个用户友好的web界面,用于探索不同植物物种的臭氧胁迫特异性转录组和微阵列数据集。它允许用户通过基于关键字的搜索检索臭氧应激反应基因数据。关键词查询后的每个条目都包含了具体物种的详细信息、叶片损伤症状、基因表达模式以及用于基因表达分析的平台,并参考文献。这种全面的生物管理将为研究人员提供更好的生物洞察植物对臭氧胁迫的反应,这将侧重于通过作物育种开发气候智能型作物。web界面可在http://www.osrgd.com免费访问。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Ozone stress responsive gene database (OSRGD ver. 1.1): A literature curated database for insight into plants' response to ozone stress

Ozone (O3) is a major abiotic stress which severely affects the growth and development of plants. In order to cope up with ozone stress, plants exhibit a plethora of morphological, physiological and molecular changes. Various molecular studies have been performed and a variety of genes exhibiting expression in response to ozone stress have been identified. However, no existing database has been designed yet to present information on ozone stress responsive genes differentially expressed across different plant species. The lack of a curated database limits the research potential in the area and therefore a cohesive database should be designed as a data repository of the ozone responsive genes. OSRGD ver. 1.1 is a user-friendly web interface to explore ozone stress specific transcriptomic and microarray dataset of different plant species. It allows users to retrieve the ozone stress responsive gene data by keyword-based search. Each entry upon keyword query contains detailed information about the specific species, its foliar injury symptoms, pattern of gene expression, and platform used for gene expression analysis with reference literature. This comprehensive bio-curation will offer researchers a better biological insight into plants' response to ozone stress which will focus on development of climate smart crops through crop breeding. The web interface is freely accessible at http://www.osrgd.com.

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来源期刊
Plant Gene
Plant Gene Agricultural and Biological Sciences-Plant Science
CiteScore
4.50
自引率
0.00%
发文量
42
审稿时长
51 days
期刊介绍: Plant Gene publishes papers that focus on the regulation, expression, function and evolution of genes in plants, algae and other photosynthesizing organisms (e.g., cyanobacteria), and plant-associated microorganisms. Plant Gene strives to be a diverse plant journal and topics in multiple fields will be considered for publication. Although not limited to the following, some general topics include: Gene discovery and characterization, Gene regulation in response to environmental stress (e.g., salinity, drought, etc.), Genetic effects of transposable elements, Genetic control of secondary metabolic pathways and metabolic enzymes. Herbal Medicine - regulation and medicinal properties of plant products, Plant hormonal signaling, Plant evolutionary genetics, molecular evolution, population genetics, and phylogenetics, Profiling of plant gene expression and genetic variation, Plant-microbe interactions (e.g., influence of endophytes on gene expression; horizontal gene transfer studies; etc.), Agricultural genetics - biotechnology and crop improvement.
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