基于动作电位波形的人工神经网络估计离子电流的初步研究

IF 1.8 4区 生物学 Q3 BIOPHYSICS
Sevgi Şengül Ayan, Selim Süleymanoğlu, Hasan Özdoğan
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引用次数: 0

摘要

使用传统的实验方法来捕获离子通道动力学的实验并不总是可行的,即使在可能和可行的情况下,有些也可能是耗时的。在这项工作中,利用人工神经网络(ann)从单个心脏动作电位(APs)波形预测了心脏动作电位(APs)期间的离子电流时间动力学。数据收集是通过使用单细胞模型来运行电生理模拟来完成的,以便根据离子通道电导的波动来识别离子电流。然后计算相关的离子电流,以及相应的心脏AP,并将其输入到人工神经网络算法中,该算法仅根据AP曲线预测所需的电流。贝叶斯方法的有效性通过从训练数据、测试数据和整个数据集获得的R(验证)分数来证明。误差值和回归表示进一步支持了贝叶斯正则化(BR)的强度和可靠性,它们都是积极的指标。由于模拟电流和包括开发的贝叶斯求解器的有效性所产生的电流之间的高度收敛,因此可以为任何电可激细胞生成所需AP波形期间的离子电流行为。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

A pilot study of ion current estimation by ANN from action potential waveforms

A pilot study of ion current estimation by ANN from action potential waveforms

Experiments using conventional experimental approaches to capture the dynamics of ion channels are not always feasible, and even when possible and feasible, some can be time-consuming. In this work, the ionic current–time dynamics during cardiac action potentials (APs) are predicted from a single AP waveform by means of artificial neural networks (ANNs). The data collection is accomplished by the use of a single-cell model to run electrophysiological simulations in order to identify ionic currents based on fluctuations in ion channel conductance. The relevant ionic currents, as well as the corresponding cardiac AP, are then calculated and fed into the ANN algorithm, which predicts the desired currents solely based on the AP curve. The validity of the proposed methodology for the Bayesian approach is demonstrated by the R (validation) scores obtained from training data, test data, and the entire data set. The Bayesian regularization’s (BR) strength and dependability are further supported by error values and the regression presentations, all of which are positive indicators. As a result of the high convergence between the simulated currents and the currents generated by including the efficacy of a developed Bayesian solver, it is possible to generate behavior of ionic currents during time for the desired AP waveform for any electrical excitable cell.

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来源期刊
Journal of Biological Physics
Journal of Biological Physics 生物-生物物理
CiteScore
3.00
自引率
5.60%
发文量
20
审稿时长
>12 weeks
期刊介绍: Many physicists are turning their attention to domains that were not traditionally part of physics and are applying the sophisticated tools of theoretical, computational and experimental physics to investigate biological processes, systems and materials. The Journal of Biological Physics provides a medium where this growing community of scientists can publish its results and discuss its aims and methods. It welcomes papers which use the tools of physics in an innovative way to study biological problems, as well as research aimed at providing a better understanding of the physical principles underlying biological processes.
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