{"title":"脉冲EPR中的定向选择性并不复杂","authors":"Zikri Hasanbasri, Sunil Saxena","doi":"10.1007/s00723-023-01594-z","DOIUrl":null,"url":null,"abstract":"<div><p>The development of rigid spin labels and high-frequency spectrometers have improved the capabilities of pulsed-EPR distance measurements in the field of structural biology. Rigid spin labels provide distance constraints that better report on the conformations of the protein or DNA backbone. Additionally, spectrometers at high frequencies improve the sensitivity of pulsed-EPR, even enabling experiments at concentrations close to cellular conditions. Unfortunately, these advents can come with a complication in that the microwave pulse cannot completely sample all orientations of the spins. Consequently, insufficient sampling biases the dipolar frequencies in a manner that depends on the relative orientations of the intramolecularly interacting spins. These relative orientations are generally unknown a <i>priori</i> in a bilabeled biomolecule. This biasing effect, dubbed ‘orientational selectivity,’ is a bottleneck to interpreting distance measurements from the dipolar signal. This review provides an overview of orientational selectivity in the context of distance measurements using Double Electron–Electron Resonance. First, we discuss the genesis of orientational selectivity and briefly overview the literature on spin labels that have manifested orientational selectivity. Second, we outline the various strategies to account for orientational selectivity effects for extracting the distance constraints. Finally, we showcase a new perspective on analyzing orientational selectivity and designing efficient experimental schemes for overcoming orientational selectivity.</p></div>","PeriodicalId":469,"journal":{"name":"Applied Magnetic Resonance","volume":"55 1-3","pages":"61 - 78"},"PeriodicalIF":1.1000,"publicationDate":"2023-08-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Orientational Selectivity in Pulsed-EPR Does Not Have to be Complicated\",\"authors\":\"Zikri Hasanbasri, Sunil Saxena\",\"doi\":\"10.1007/s00723-023-01594-z\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<div><p>The development of rigid spin labels and high-frequency spectrometers have improved the capabilities of pulsed-EPR distance measurements in the field of structural biology. Rigid spin labels provide distance constraints that better report on the conformations of the protein or DNA backbone. Additionally, spectrometers at high frequencies improve the sensitivity of pulsed-EPR, even enabling experiments at concentrations close to cellular conditions. Unfortunately, these advents can come with a complication in that the microwave pulse cannot completely sample all orientations of the spins. Consequently, insufficient sampling biases the dipolar frequencies in a manner that depends on the relative orientations of the intramolecularly interacting spins. These relative orientations are generally unknown a <i>priori</i> in a bilabeled biomolecule. This biasing effect, dubbed ‘orientational selectivity,’ is a bottleneck to interpreting distance measurements from the dipolar signal. This review provides an overview of orientational selectivity in the context of distance measurements using Double Electron–Electron Resonance. First, we discuss the genesis of orientational selectivity and briefly overview the literature on spin labels that have manifested orientational selectivity. Second, we outline the various strategies to account for orientational selectivity effects for extracting the distance constraints. 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引用次数: 0
摘要
刚性自旋标签和高频光谱仪的发展提高了结构生物学领域脉冲电子能谱距离测量的能力。刚性自旋标签提供了距离约束,能更好地报告蛋白质或 DNA 主干的构象。此外,高频率光谱仪提高了脉冲-EPR 的灵敏度,甚至可以在接近细胞浓度的条件下进行实验。遗憾的是,这些优点也会带来一个复杂问题,那就是微波脉冲无法对自旋的所有方向进行完全采样。因此,取样不足会使偶极频率产生偏差,这种偏差取决于分子内相互作用的自旋的相对取向。在双标记生物大分子中,这些相对取向通常是先验未知的。这种被称为 "取向选择性 "的偏差效应是解释双极信号距离测量的瓶颈。本综述概述了利用双电子-电子共振进行距离测量时的定向选择性。首先,我们讨论了方向选择性的起源,并简要概述了表现出方向选择性的自旋标签文献。其次,我们概述了在提取距离约束时考虑定向选择效应的各种策略。最后,我们展示了分析方向选择性和设计克服方向选择性的高效实验方案的新视角。
Orientational Selectivity in Pulsed-EPR Does Not Have to be Complicated
The development of rigid spin labels and high-frequency spectrometers have improved the capabilities of pulsed-EPR distance measurements in the field of structural biology. Rigid spin labels provide distance constraints that better report on the conformations of the protein or DNA backbone. Additionally, spectrometers at high frequencies improve the sensitivity of pulsed-EPR, even enabling experiments at concentrations close to cellular conditions. Unfortunately, these advents can come with a complication in that the microwave pulse cannot completely sample all orientations of the spins. Consequently, insufficient sampling biases the dipolar frequencies in a manner that depends on the relative orientations of the intramolecularly interacting spins. These relative orientations are generally unknown a priori in a bilabeled biomolecule. This biasing effect, dubbed ‘orientational selectivity,’ is a bottleneck to interpreting distance measurements from the dipolar signal. This review provides an overview of orientational selectivity in the context of distance measurements using Double Electron–Electron Resonance. First, we discuss the genesis of orientational selectivity and briefly overview the literature on spin labels that have manifested orientational selectivity. Second, we outline the various strategies to account for orientational selectivity effects for extracting the distance constraints. Finally, we showcase a new perspective on analyzing orientational selectivity and designing efficient experimental schemes for overcoming orientational selectivity.
期刊介绍:
Applied Magnetic Resonance provides an international forum for the application of magnetic resonance in physics, chemistry, biology, medicine, geochemistry, ecology, engineering, and related fields.
The contents include articles with a strong emphasis on new applications, and on new experimental methods. Additional features include book reviews and Letters to the Editor.