玉米热休克蛋白——不同ZmHSP家族的展望、验证、分类和计算机分析

Rubens Diogo-Jr, Edila Vilela de Resende Von Pinho, Renan Terassi Pinto, Lingrui Zhang, Jorge Alberto Condori-Apfata, Paula Andrade Pereira, Danielle Rezende Vilela
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引用次数: 0

摘要

在能够有效缓解恶劣天气影响的植物分子机制中,热休克蛋白(HSPs)作为一组具有多种功能的伴侣蛋白最为突出。在基因组学全面发展的今天,它们在基因工程领域非常有前景,特别是在孕育出具有抗非生物胁迫能力的优良基因型方面。近年来,一些关于玉米热休克蛋白(ZmHSPs)家族的研究成果陆续发表。然而,仍然缺乏一项具有高度标准的研究,可以充分综合它们。使用不同但互补的策略,我们已经寻找了尽可能多的ZmHSPs候选物,收集了1000多个候选物。经过详细的数据挖掘,我们计算了182个经过验证的,属于7个家族,这些家族被细分为具有功能奇偶潜力的类。在这些基因中,我们发现了几十个与来自不同领域的蛋白质具有一定程度相似性的基序,这可能有助于解释它们的一些仍然知之甚少的作用方式。通过硅和体外方法,我们比较了在不同组织、不同物候阶段受控暴露于几种AbSts来源后它们的表达水平。在基因本体概念的基础上,我们仍然从术语充实的不同角度对它们进行了分析。我们也在模式植物和近亲物种中寻找潜在的同源基因。有了所有这些新的见解,最终形成了丰富的补充材料,表格丰富,我们的目标是为那些被这些有趣的应激蛋白吸引的玉米研究人员提供丰富的咨询资源。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Maize heat shock proteins-prospection, validation, categorization and in silico analysis of the different ZmHSP families.

Among the plant molecular mechanisms capable of effectively mitigating the effects of adverse weather conditions, the heat shock proteins (HSPs), a group of chaperones with multiple functions, stand out. At a time of full progress on the omic sciences, they look very promising in the genetic engineering field, especially in order to conceive superior genotypes, potentially tolerant to abiotic stresses (AbSts). Recently, some works concerning certain families of maize HSPs (ZmHSPs) were published. However, there was still a lack of a study that, with a high degree of criteria, would fully conglomerate them. Using distinct but complementary strategies, we have prospected as many ZmHSPs candidates as possible, gathering more than a thousand accessions. After detailed data mining, we accounted for 182 validated ones, belonging to seven families, which were subcategorized into classes with potential for functional parity. In them, we identified dozens of motifs with some degree of similarity with proteins from different kingdoms, which may help explain some of their still poorly understood means of action. Through in silico and in vitro approaches, we compared their expression levels after controlled exposure to several AbSts' sources, applied at diverse tissues, on varied phenological stages. Based on gene ontology concepts, we still analyzed them from different perspectives of term enrichment. We have also searched, in model plants and close species, for potentially orthologous genes. With all these new insights, which culminated in a plentiful supplementary material, rich in tables, we aim to constitute a fertile consultation source for those maize researchers attracted by these interesting stress proteins.

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