{"title":"十氢化萘天然产物的化学生物学特性和diels - alderase作用机制的最新进展","authors":"Kenji Watanabe, Michio Sato, Hiroyuki Osada","doi":"10.1186/s40694-022-00139-6","DOIUrl":null,"url":null,"abstract":"<p><p>The Diels-Alder (DA) reaction refers to a [4 + 2] cycloaddition reaction that falls under the category of pericyclic reactions. It is a reaction that allows regio- and stereo-selective construction of two carbon-carbon bonds simultaneously in a concerted manner to generate a six-membered ring structure through a six-electron cyclic transition state. The DA reaction is one of the most widely applied reactions in organic synthesis, yet its role in biological systems has been debated intensely over the last four decades. A survey of secondary metabolites produced by microorganisms suggests strongly that many of the compounds possess features that are likely formed through DA reactions, and most of them are considered to be catalyzed by enzymes that are commonly referred to as Diels-Alderases (DAases). In recent years, especially over the past 10 years or so, we have seen an accumulation of a substantial body of work that substantiates the argument that DAases indeed exist and play a critical role in the biosynthesis of complex metabolites. This review will cover the DAases involved in the biosynthesis of decalin moieties, which are found in many of the medicinally important natural products, especially those produced by fungi. In particular, we will focus on a subset of secondary metabolites referred to as pyrrolidine-2-one-bearing decalin compounds and discuss the decalin ring stereochemistry and the biological activities of those compounds. We will also look into the genes and enzymes that drive the biosynthetic construction of those complex natural products, and highlight the recent progress made on the structural and mechanistic understanding of DAases, especially regarding how those enzymes exert stereochemical control over the [4 + 2] cycloaddition reactions they catalyze.</p>","PeriodicalId":52292,"journal":{"name":"Fungal Biology and Biotechnology","volume":" ","pages":"9"},"PeriodicalIF":0.0000,"publicationDate":"2022-04-29","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9055775/pdf/","citationCount":"0","resultStr":"{\"title\":\"Recent advances in the chemo-biological characterization of decalin natural products and unraveling of the workings of Diels-Alderases.\",\"authors\":\"Kenji Watanabe, Michio Sato, Hiroyuki Osada\",\"doi\":\"10.1186/s40694-022-00139-6\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><p>The Diels-Alder (DA) reaction refers to a [4 + 2] cycloaddition reaction that falls under the category of pericyclic reactions. It is a reaction that allows regio- and stereo-selective construction of two carbon-carbon bonds simultaneously in a concerted manner to generate a six-membered ring structure through a six-electron cyclic transition state. The DA reaction is one of the most widely applied reactions in organic synthesis, yet its role in biological systems has been debated intensely over the last four decades. A survey of secondary metabolites produced by microorganisms suggests strongly that many of the compounds possess features that are likely formed through DA reactions, and most of them are considered to be catalyzed by enzymes that are commonly referred to as Diels-Alderases (DAases). In recent years, especially over the past 10 years or so, we have seen an accumulation of a substantial body of work that substantiates the argument that DAases indeed exist and play a critical role in the biosynthesis of complex metabolites. This review will cover the DAases involved in the biosynthesis of decalin moieties, which are found in many of the medicinally important natural products, especially those produced by fungi. In particular, we will focus on a subset of secondary metabolites referred to as pyrrolidine-2-one-bearing decalin compounds and discuss the decalin ring stereochemistry and the biological activities of those compounds. We will also look into the genes and enzymes that drive the biosynthetic construction of those complex natural products, and highlight the recent progress made on the structural and mechanistic understanding of DAases, especially regarding how those enzymes exert stereochemical control over the [4 + 2] cycloaddition reactions they catalyze.</p>\",\"PeriodicalId\":52292,\"journal\":{\"name\":\"Fungal Biology and Biotechnology\",\"volume\":\" \",\"pages\":\"9\"},\"PeriodicalIF\":0.0000,\"publicationDate\":\"2022-04-29\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9055775/pdf/\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Fungal Biology and Biotechnology\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://doi.org/10.1186/s40694-022-00139-6\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q1\",\"JCRName\":\"Agricultural and Biological Sciences\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Fungal Biology and Biotechnology","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.1186/s40694-022-00139-6","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q1","JCRName":"Agricultural and Biological Sciences","Score":null,"Total":0}
引用次数: 0
摘要
Diels-Alder(DA)反应是指一种[4 + 2]环化反应,属于过环反应的范畴。它是一种通过六电子环状过渡态,同时以协同方式构建两个碳-碳键,从而生成六元环结构的反应,具有区域和立体选择性。DA 反应是有机合成中应用最广泛的反应之一,但在过去的四十年中,它在生物系统中的作用一直备受争议。对微生物产生的次级代谢产物的调查强烈表明,许多化合物都具有可能是通过 DA 反应形成的特征,其中大多数被认为是由通常称为 Diels-Alderases (DAases)的酶催化的。近年来,特别是在过去 10 年左右的时间里,我们看到大量研究成果证实了 DAases 确实存在,并且在复杂代谢物的生物合成过程中发挥着关键作用。本综述将介绍参与蜕皮激素生物合成的 DA 酶,它们存在于许多具有重要药用价值的天然产品中,尤其是由真菌生产的产品。我们将特别关注次生代谢物的一个子集,即含有吡咯烷-2-酮的蜕皮素化合物,并讨论这些化合物的蜕皮素环立体化学和生物活性。我们还将研究驱动这些复杂天然产物生物合成构建的基因和酶,并重点介绍对萘烷酶的结构和机理认识的最新进展,特别是这些酶如何对其催化的[4 + 2]环化反应进行立体化学控制。
Recent advances in the chemo-biological characterization of decalin natural products and unraveling of the workings of Diels-Alderases.
The Diels-Alder (DA) reaction refers to a [4 + 2] cycloaddition reaction that falls under the category of pericyclic reactions. It is a reaction that allows regio- and stereo-selective construction of two carbon-carbon bonds simultaneously in a concerted manner to generate a six-membered ring structure through a six-electron cyclic transition state. The DA reaction is one of the most widely applied reactions in organic synthesis, yet its role in biological systems has been debated intensely over the last four decades. A survey of secondary metabolites produced by microorganisms suggests strongly that many of the compounds possess features that are likely formed through DA reactions, and most of them are considered to be catalyzed by enzymes that are commonly referred to as Diels-Alderases (DAases). In recent years, especially over the past 10 years or so, we have seen an accumulation of a substantial body of work that substantiates the argument that DAases indeed exist and play a critical role in the biosynthesis of complex metabolites. This review will cover the DAases involved in the biosynthesis of decalin moieties, which are found in many of the medicinally important natural products, especially those produced by fungi. In particular, we will focus on a subset of secondary metabolites referred to as pyrrolidine-2-one-bearing decalin compounds and discuss the decalin ring stereochemistry and the biological activities of those compounds. We will also look into the genes and enzymes that drive the biosynthetic construction of those complex natural products, and highlight the recent progress made on the structural and mechanistic understanding of DAases, especially regarding how those enzymes exert stereochemical control over the [4 + 2] cycloaddition reactions they catalyze.