Yingyi Fu , Yu Luo , Caixian Tang , Yong Li , Georg Guggenberger , Jianming Xu
{"title":"资源利用从植物残体转向根沉积物时土壤细菌群落的演替","authors":"Yingyi Fu , Yu Luo , Caixian Tang , Yong Li , Georg Guggenberger , Jianming Xu","doi":"10.1016/j.soilbio.2022.108785","DOIUrl":null,"url":null,"abstract":"<div><p>Identifying the core taxa involved in the utilization of plant straw or/and rhizodeposits is key to understanding the microbial mechanisms underlying the turnover of these plant-derived organic matters, known as the “brown” path and “green” path, respectively. However, this still remains a challenge, primarily due to methodological limitations. By adopting a novel experimental design of parallel <sup>13</sup><span>C-labelling and DNA-SIP, we identified microorganisms that utilized rhizodeposits and plant straw in soils containing these two plant-derived substances. Additionally, to compare straw utilizers in the soil without plants (straw only) and with plants (straw plus rhizodeposits), we investigated the shift of these substrate-stimulated communities (e.g., straw utilizers) in the presence of live maize plants. Here we showed that i) rhizodeposits were used by a wide range of root-associated microorganisms but plant straw was mainly utilized by oligotrophs, e.g., </span><span><em>Arthrobacter</em></span>, when these two plant-derived substances were co-present; and ii) there was a shift in the bacterial straw utilizer community, e.g., <span><em>Streptomyces</em></span><span><span>, and their physiological metabolism from saprotrophy<span> to symbiosis when maize plants were present. This study identified distinct utilizers of plant-derived substances, i.e. straw or rhizodeposits, and revealed the shift of soil bacterial community and metabolisms along the </span></span>autotroph -saprotroph -mutualism continuum.</span></p></div>","PeriodicalId":21888,"journal":{"name":"Soil Biology & Biochemistry","volume":null,"pages":null},"PeriodicalIF":9.8000,"publicationDate":"2022-10-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"6","resultStr":"{\"title\":\"Succession of the soil bacterial community as resource utilization shifts from plant residues to rhizodeposits\",\"authors\":\"Yingyi Fu , Yu Luo , Caixian Tang , Yong Li , Georg Guggenberger , Jianming Xu\",\"doi\":\"10.1016/j.soilbio.2022.108785\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<div><p>Identifying the core taxa involved in the utilization of plant straw or/and rhizodeposits is key to understanding the microbial mechanisms underlying the turnover of these plant-derived organic matters, known as the “brown” path and “green” path, respectively. However, this still remains a challenge, primarily due to methodological limitations. By adopting a novel experimental design of parallel <sup>13</sup><span>C-labelling and DNA-SIP, we identified microorganisms that utilized rhizodeposits and plant straw in soils containing these two plant-derived substances. Additionally, to compare straw utilizers in the soil without plants (straw only) and with plants (straw plus rhizodeposits), we investigated the shift of these substrate-stimulated communities (e.g., straw utilizers) in the presence of live maize plants. Here we showed that i) rhizodeposits were used by a wide range of root-associated microorganisms but plant straw was mainly utilized by oligotrophs, e.g., </span><span><em>Arthrobacter</em></span>, when these two plant-derived substances were co-present; and ii) there was a shift in the bacterial straw utilizer community, e.g., <span><em>Streptomyces</em></span><span><span>, and their physiological metabolism from saprotrophy<span> to symbiosis when maize plants were present. This study identified distinct utilizers of plant-derived substances, i.e. straw or rhizodeposits, and revealed the shift of soil bacterial community and metabolisms along the </span></span>autotroph -saprotroph -mutualism continuum.</span></p></div>\",\"PeriodicalId\":21888,\"journal\":{\"name\":\"Soil Biology & Biochemistry\",\"volume\":null,\"pages\":null},\"PeriodicalIF\":9.8000,\"publicationDate\":\"2022-10-01\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"6\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Soil Biology & Biochemistry\",\"FirstCategoryId\":\"97\",\"ListUrlMain\":\"https://www.sciencedirect.com/science/article/pii/S0038071722002425\",\"RegionNum\":1,\"RegionCategory\":\"农林科学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q1\",\"JCRName\":\"SOIL SCIENCE\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Soil Biology & Biochemistry","FirstCategoryId":"97","ListUrlMain":"https://www.sciencedirect.com/science/article/pii/S0038071722002425","RegionNum":1,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q1","JCRName":"SOIL SCIENCE","Score":null,"Total":0}
Succession of the soil bacterial community as resource utilization shifts from plant residues to rhizodeposits
Identifying the core taxa involved in the utilization of plant straw or/and rhizodeposits is key to understanding the microbial mechanisms underlying the turnover of these plant-derived organic matters, known as the “brown” path and “green” path, respectively. However, this still remains a challenge, primarily due to methodological limitations. By adopting a novel experimental design of parallel 13C-labelling and DNA-SIP, we identified microorganisms that utilized rhizodeposits and plant straw in soils containing these two plant-derived substances. Additionally, to compare straw utilizers in the soil without plants (straw only) and with plants (straw plus rhizodeposits), we investigated the shift of these substrate-stimulated communities (e.g., straw utilizers) in the presence of live maize plants. Here we showed that i) rhizodeposits were used by a wide range of root-associated microorganisms but plant straw was mainly utilized by oligotrophs, e.g., Arthrobacter, when these two plant-derived substances were co-present; and ii) there was a shift in the bacterial straw utilizer community, e.g., Streptomyces, and their physiological metabolism from saprotrophy to symbiosis when maize plants were present. This study identified distinct utilizers of plant-derived substances, i.e. straw or rhizodeposits, and revealed the shift of soil bacterial community and metabolisms along the autotroph -saprotroph -mutualism continuum.
期刊介绍:
Soil Biology & Biochemistry publishes original research articles of international significance focusing on biological processes in soil and their applications to soil and environmental quality. Major topics include the ecology and biochemical processes of soil organisms, their effects on the environment, and interactions with plants. The journal also welcomes state-of-the-art reviews and discussions on contemporary research in soil biology and biochemistry.