拟南芥甘氨酸富蛋白AtGRP2冷激域的1 H、15 N和13 C主链和侧链共振分配

IF 0.8 4区 生物学 Q4 BIOPHYSICS
Karina C. Pougy, Gilberto Sachetto-Martins, Fabio C. L. Almeida, Anderson S. Pinheiro
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引用次数: 0

摘要

AtGRP2(拟南芥甘氨酸丰富蛋白2)是一个19 kda的rna结合的富含甘氨酸的蛋白,调节拟南芥的关键过程。AtGRP2是一种核细胞质蛋白,在分生组织、心皮、花药和胚胎等发育组织中优先表达。AtGRP2基因敲低导致早开花表型。此外,atgrp2沉默的植物雄蕊数量减少,胚胎和种子发育异常,表明其参与植物发育。AtGRP2的表达受低温和非生物胁迫(如高盐度)的高度诱导。此外,AtGRP2促进双链DNA/RNA变性,表明其在冷驯化过程中作为RNA伴侣的作用。AtGRP2由一个n端冷冲击域(CSD)和一个c端柔性区组成,该柔性区包含两个cchc型锌指,其中穿插着富含甘氨酸的序列。尽管AtGRP2在开花时间调节和寒冷适应中具有功能相关性,但其分子机制在很大程度上是未知的。迄今为止,文献中没有关于AtGRP2的结构信息。在这里,我们报告了AtGRP2的n端冷激波域的1H, 15N和13C主链和侧链共振分配,以及化学位移衍生的二级结构倾向,包括残基1-90。这些数据为AtGRP2-CSD的三维结构、动力学和RNA结合特异性研究提供了框架,有助于揭示其作用机制。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

1 H, 15 N, and 13 C backbone and side chain resonance assignments of the cold shock domain of the Arabidopsis thaliana glycine-rich protein AtGRP2

1 H, 15 N, and 13 C backbone and side chain resonance assignments of the cold shock domain of the Arabidopsis thaliana glycine-rich protein AtGRP2

AtGRP2 (Arabidopsis thaliana glycine-rich protein 2) is a 19-kDa RNA-binding glycine-rich protein that regulates key processes in A. thaliana. AtGRP2 is a nucleo-cytoplasmic protein with preferential expression in developing tissues, such as meristems, carpels, anthers, and embryos. AtGRP2 knockdown leads to an early flowering phenotype. In addition, AtGRP2-silenced plants exhibit a reduced number of stamens and abnormal development of embryos and seeds, suggesting its involvement in plant development. AtGRP2 expression is highly induced by cold and abiotic stresses, such as high salinity. Moreover, AtGRP2 promotes double-stranded DNA/RNA denaturation, indicating its role as an RNA chaperone during cold acclimation. AtGRP2 is composed of an N-terminal cold shock domain (CSD) followed by a C-terminal flexible region containing two CCHC-type zinc fingers interspersed with glycine-rich sequences. Despite its functional relevance in flowering time regulation and cold adaptation, the molecular mechanisms employed by AtGRP2 are largely unknown. To date, there is no structural information regarding AtGRP2 in the literature. Here, we report the 1H, 15N, and 13C backbone and side chain resonance assignments, as well as the chemical shift-derived secondary structure propensities, of the N-terminal cold shock domain of AtGRP2, encompassing residues 1–90. These data provide a framework for AtGRP2-CSD three-dimensional structure, dynamics, and RNA binding specificity investigation, which will shed light on its mechanism of action.

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来源期刊
Biomolecular NMR Assignments
Biomolecular NMR Assignments 生物-光谱学
CiteScore
1.70
自引率
11.10%
发文量
59
审稿时长
6-12 weeks
期刊介绍: Biomolecular NMR Assignments provides a forum for publishing sequence-specific resonance assignments for proteins and nucleic acids as Assignment Notes. Chemical shifts for NMR-active nuclei in macromolecules contain detailed information on molecular conformation and properties. Publication of resonance assignments in Biomolecular NMR Assignments ensures that these data are deposited into a public database at BioMagResBank (BMRB; http://www.bmrb.wisc.edu/), where they are available to other researchers. Coverage includes proteins and nucleic acids; Assignment Notes are processed for rapid online publication and are published in biannual online editions in June and December.
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