鲎科(Diptera:Calyptratae:Oestroidea)的系统发育基因组分析:理解亚科关系的转录组方法。

IF 3.9 2区 生物学 Q1 EVOLUTIONARY BIOLOGY
Cladistics Pub Date : 2023-10-13 DOI:10.1111/cla.12562
Letícia Chiara Baldassio de Paula, Rodrigo de Vilhena Perez Dios, Filipe Macedo Gudin, Marcelo Domingos de Santis, Deivys Moises Alvarez-Garcia, Manuel Antunes Júnior, Beatriz Vieira Freire, Fernando Portella de Luna Marques, Daniel José Galafasse Lahr, Silvio Shigueo Nihei
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引用次数: 0

摘要

鲎科是双翅目中物种第二多的科。它由四个亚科组成,所有成员都有寄生蜂的习性。我们首次利用转录组数据对30个种的鲎科进行了系统发育分析。我们构建了四个数据集:三个使用氨基酸水平的翻译数据(100%覆盖率,106个单拷贝蛋白质编码基因;75%覆盖率,1359个基因;50%覆盖率,1942个基因)。通过使用最大似然和最大简约推断分析四个矩阵来估计树,并且在它们之间只发现了微小的差异。总体而言,我们的拓扑结构得到了很好的解决,具有高节点支持。Pollenidae被证实是Tachinidae的姐妹群。在鲎科中,我们的研究结果证实了这一假设(Phasiinae + Dexiinae) + (心动过速 + Exoristinae)。Phasiinae、Dexiinae和Exoristinae被恢复为单系,而Tachininae被恢复为多系。再次,Myiophasiini(Tachininae)部落组成了第五个谱系,是所有剩余Tachinidae的分支姐妹。新热带部落Iceliini,以前在Tachininae,在Winthemiini的妹妹Exoristinae内被发现。总的来说,我们的结果与最近的系统发育研究一致,这些研究包括鲎科,并重要地证实了鲎亚科的关系和鲎科第五谱系的存在。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Phylogenomic analysis of Tachinidae (Diptera: Calyptratae: Oestroidea): a transcriptomic approach to understanding the subfamily relationships

Tachinidae is the second most species-rich family of Diptera. It comprises four subfamilies, and all of its members have parasitoid habits. We present the first phylogenomic analysis of Tachinidae using transcriptomic data, based on 30 species. We constructed four datasets: three using translated data at the amino acid level (100% coverage, with 106 single-copy protein-coding genes; 75% coverage, with 1359 genes; and 50% coverage, with 1942 genes). The trees were estimated by analysing four matrices using maximum likelihood and maximum parsimony inferences, and only minor differences were found among them. Overall, our topologies are well resolved, with high node support. Polleniidae is corroborated as a sister group to Tachinidae. Within Tachinidae, our results confirm the hypothesis (Phasiinae + Dexiinae) + (Tachininae + Exoristinae). Phasiinae, Dexiinae and Exoristinae are recovered as monophyletic, and Tachininae as polyphyletic. Once again, the tribe Myiophasiini (Tachininae) composes a fifth lineage, clade sister to all the remaining Tachinidae. The Neotropical tribe Iceliini, formerly in Tachininae, is recovered within Exoristinae, sister to Winthemiini. In general, our results are congruent with recent phylogenetic studies that include tachinids, with the important confirmation of the subfamilial relationships and the existence of a fifth lineage of Tachinidae.

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来源期刊
Cladistics
Cladistics 生物-进化生物学
CiteScore
8.60
自引率
5.60%
发文量
34
期刊介绍: Cladistics publishes high quality research papers on systematics, encouraging debate on all aspects of the field, from philosophy, theory and methodology to empirical studies and applications in biogeography, coevolution, conservation biology, ontogeny, genomics and paleontology. Cladistics is read by scientists working in the research fields of evolution, systematics and integrative biology and enjoys a consistently high position in the ISI® rankings for evolutionary biology.
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