从马里亚纳海沟沉积物中分离出的耐压性kunmingstutzerimensis 7850S的全基因组序列

IF 1.3 4区 生物学 Q4 GENETICS & HEREDITY
Jia-Wei Wang , Kun Shang , Sheng-Yi Wu , Bo-Yu Zhu , Mei-Gui Han , Yuan Zhao , Yi-Qiu Chen , Jia Xie , Bo Huang , Zhuang Han
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引用次数: 0

摘要

昆明Stutzerimonas kunmingensis 7850S是一种从马里亚纳海沟沉积物中分离出来的耐压细菌。本研究描述了菌株7850S的完整基因组,该基因组包含一条单圆形染色体,长度为4,775,870个碱基对,G + C含量为62.66%,包含4494个蛋白质编码基因、65个转移RNA基因和12个核糖体RNA基因。实验结果表明,菌株7850S在0.1 ~ 70 MPa的静水压力下能够生长。基因组分析鉴定出大量与高静水压力相关的基因,如与不饱和脂肪酸、甜菜碱和外托碱相关的基因。在该菌株中还发现了一套完整的反硝化基因和一些重金属脱毒基因。这些基因的存在提示了细菌适应hadal环境的代谢特征,为进一步了解Stutzerimonas在hadal环境中的适应策略和生态作用提供了见解。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Complete genome sequence of piezotolerant Stutzerimonas kunmingensis 7850S isolated from the sediment of the Mariana Trench

Stutzerimonas kunmingensis 7850S is a piezotolerant bacterium isolated from the sediment of the Mariana trench. Here, we described the complete genome of strain 7850S, which contains a single circular chromosome of 4,775,870 base pairs with 62.66% G + C content, and harbors 4494 protein-coding genes, 65 transfer RNA genes, and 12 ribosomal RNA genes. The experimental results showed that strain 7850S could grow under hydrostatic pressure of 0.1–70 MPa. Genomic analyses led to identifications of numbers of high hydrostatic pressure-associated genes, such as the ones associated with unsaturated fatty acids, betaine, and ectoine. A complete set of denitrification genes and some heavy metal detoxification genes were also found in this strain. The presence of these genes suggests metabolic characteristics for adaption to hadal environments and provides insights to further understand adaption strategies and ecological roles of Stutzerimonas in hadal environments.

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来源期刊
Marine genomics
Marine genomics 生物-遗传学
CiteScore
3.60
自引率
5.30%
发文量
50
审稿时长
29 days
期刊介绍: The journal publishes papers on all functional and evolutionary aspects of genes, chromatin, chromosomes and (meta)genomes of marine (and freshwater) organisms. It deals with new genome-enabled insights into the broader framework of environmental science. Topics within the scope of this journal include: • Population genomics and ecology • Evolutionary and developmental genomics • Comparative genomics • Metagenomics • Environmental genomics • Systems biology More specific topics include: geographic and phylogenomic characterization of aquatic organisms, metabolic capacities and pathways of organisms and communities, biogeochemical cycles, genomics and integrative approaches applied to microbial ecology including (meta)transcriptomics and (meta)proteomics, tracking of infectious diseases, environmental stress, global climate change and ecosystem modelling.
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