Lei Yang, Juan Jin, Dingyu Fan, Qing Hao, Jianxin Niu
{"title":"红枣(Ziziphus jujuba Mill.)对热应激反应的转录组分析。","authors":"Lei Yang, Juan Jin, Dingyu Fan, Qing Hao, Jianxin Niu","doi":"10.1155/2021/3442277","DOIUrl":null,"url":null,"abstract":"<p><p>Heat stress (HS) is a common stress influencing the growth and reproduction of plant species. Jujube (<i>Ziziphus jujuba</i> Mill.) is an economically important tree with strong abiotic stress resistance, but the molecular mechanism of its response to HS remains elusive. In this study, we subjected seedlings of <i>Z. jujuba</i> cultivar \"Hqing1-HR\" to HS (45°C) for 0, 1, 3, 5, and 7 days, respectively, and collected the leaf samples (HR0, HR1, HR3, HR5, and HR7) accordingly. Fifteen cDNA libraries from leaves were constructed for transcriptomics assays. RNA sequencing and transcriptomics identified 1,642, 4,080, 5,160, and 2,119 differentially expressed genes (DEGs) in comparisons of HR1 vs. HR0, HR3 vs. HR0, HR5 vs. HR0, and HR7 vs. HR0, respectively. Gene ontology analyses of the DEGs from these comparisons revealed enrichment in a series of biological processes involved in stress responses, photosynthesis, and metabolism, suggesting that lowering or upregulating expression of these genes might play important roles in the response to HS. This study contributed to our understanding of the molecular mechanism of jujube response to HS and will be beneficial for developing jujube cultivars with improved heat resistance.</p>","PeriodicalId":13988,"journal":{"name":"International Journal of Genomics","volume":"2021 ","pages":"3442277"},"PeriodicalIF":2.6000,"publicationDate":"2021-12-02","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8660251/pdf/","citationCount":"0","resultStr":"{\"title\":\"Transcriptome Analysis of Jujube (<i>Ziziphus jujuba</i> Mill.) Response to Heat Stress.\",\"authors\":\"Lei Yang, Juan Jin, Dingyu Fan, Qing Hao, Jianxin Niu\",\"doi\":\"10.1155/2021/3442277\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><p>Heat stress (HS) is a common stress influencing the growth and reproduction of plant species. Jujube (<i>Ziziphus jujuba</i> Mill.) is an economically important tree with strong abiotic stress resistance, but the molecular mechanism of its response to HS remains elusive. In this study, we subjected seedlings of <i>Z. jujuba</i> cultivar \\\"Hqing1-HR\\\" to HS (45°C) for 0, 1, 3, 5, and 7 days, respectively, and collected the leaf samples (HR0, HR1, HR3, HR5, and HR7) accordingly. Fifteen cDNA libraries from leaves were constructed for transcriptomics assays. RNA sequencing and transcriptomics identified 1,642, 4,080, 5,160, and 2,119 differentially expressed genes (DEGs) in comparisons of HR1 vs. HR0, HR3 vs. HR0, HR5 vs. HR0, and HR7 vs. HR0, respectively. Gene ontology analyses of the DEGs from these comparisons revealed enrichment in a series of biological processes involved in stress responses, photosynthesis, and metabolism, suggesting that lowering or upregulating expression of these genes might play important roles in the response to HS. This study contributed to our understanding of the molecular mechanism of jujube response to HS and will be beneficial for developing jujube cultivars with improved heat resistance.</p>\",\"PeriodicalId\":13988,\"journal\":{\"name\":\"International Journal of Genomics\",\"volume\":\"2021 \",\"pages\":\"3442277\"},\"PeriodicalIF\":2.6000,\"publicationDate\":\"2021-12-02\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8660251/pdf/\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"International Journal of Genomics\",\"FirstCategoryId\":\"99\",\"ListUrlMain\":\"https://doi.org/10.1155/2021/3442277\",\"RegionNum\":4,\"RegionCategory\":\"生物学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"2021/1/1 0:00:00\",\"PubModel\":\"eCollection\",\"JCR\":\"Q3\",\"JCRName\":\"BIOCHEMISTRY & MOLECULAR BIOLOGY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"International Journal of Genomics","FirstCategoryId":"99","ListUrlMain":"https://doi.org/10.1155/2021/3442277","RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"2021/1/1 0:00:00","PubModel":"eCollection","JCR":"Q3","JCRName":"BIOCHEMISTRY & MOLECULAR BIOLOGY","Score":null,"Total":0}
引用次数: 0
摘要
热胁迫(HS)是影响植物物种生长和繁殖的常见胁迫。枣树(Ziziphus jujuba Mill.)在本研究中,我们将栽培品种 "Hqing1-HR "的幼苗分别置于HS(45°C)条件下0、1、3、5和7天,并收集相应的叶片样本(HR0、HR1、HR3、HR5和HR7)。从叶片中构建了 15 个 cDNA 文库,用于转录组学检测。通过 RNA 测序和转录组学分析,在 HR1 vs. HR0、HR3 vs. HR0、HR5 vs. HR0 和 HR7 vs. HR0 的比较中分别发现了 1,642 个、4,080 个、5,160 个和 2,119 个差异表达基因(DEGs)。对这些比较中的 DEGs 进行的基因本体分析表明,这些 DEGs 富集于一系列涉及胁迫响应、光合作用和新陈代谢的生物过程中,表明降低或上调这些基因的表达可能在对 HS 的响应中发挥重要作用。这项研究有助于我们了解红枣对HS响应的分子机制,对培育抗热性更强的红枣栽培品种大有裨益。
Transcriptome Analysis of Jujube (Ziziphus jujuba Mill.) Response to Heat Stress.
Heat stress (HS) is a common stress influencing the growth and reproduction of plant species. Jujube (Ziziphus jujuba Mill.) is an economically important tree with strong abiotic stress resistance, but the molecular mechanism of its response to HS remains elusive. In this study, we subjected seedlings of Z. jujuba cultivar "Hqing1-HR" to HS (45°C) for 0, 1, 3, 5, and 7 days, respectively, and collected the leaf samples (HR0, HR1, HR3, HR5, and HR7) accordingly. Fifteen cDNA libraries from leaves were constructed for transcriptomics assays. RNA sequencing and transcriptomics identified 1,642, 4,080, 5,160, and 2,119 differentially expressed genes (DEGs) in comparisons of HR1 vs. HR0, HR3 vs. HR0, HR5 vs. HR0, and HR7 vs. HR0, respectively. Gene ontology analyses of the DEGs from these comparisons revealed enrichment in a series of biological processes involved in stress responses, photosynthesis, and metabolism, suggesting that lowering or upregulating expression of these genes might play important roles in the response to HS. This study contributed to our understanding of the molecular mechanism of jujube response to HS and will be beneficial for developing jujube cultivars with improved heat resistance.
期刊介绍:
International Journal of Genomics is a peer-reviewed, Open Access journal that publishes research articles as well as review articles in all areas of genome-scale analysis. Topics covered by the journal include, but are not limited to: bioinformatics, clinical genomics, disease genomics, epigenomics, evolutionary genomics, functional genomics, genome engineering, and synthetic genomics.