根据复制器空间内病毒球的位置定义病毒

IF 8 1区 生物学 Q1 MICROBIOLOGY
Microbiology and Molecular Biology Reviews Pub Date : 2021-12-15 Epub Date: 2021-09-01 DOI:10.1128/MMBR.00193-20
Eugene V Koonin, Valerian V Dolja, Mart Krupovic, Jens H Kuhn
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引用次数: 0

摘要

最初,病毒被定义为微小的传染性病原体,可以通过过滤器,甚至保留最小的细胞。后来,病毒被认为是强制性的细胞内寄生虫,其繁殖依赖于细胞宿主的能量供应和分子构建模块。然而,这些特征还不足以明确定义今天人们广泛理解的病毒。我们概述了定义病毒的可能方法,并探讨了复制体虚拟空间中病毒球的边界以及病毒与其他类型复制体之间的关系。无论病毒究竟如何定义,病毒显然已多次从质粒等非病毒复制体进化而来,通过招募宿主蛋白质成为病毒体的组成部分。相反,其他类型的复制体也多次从病毒进化而来。因此,病毒球是一个动态的实体,其边界之间有着广泛的进化交流。我们认为,病毒球(在此称为正病毒球)由多种不同的复制子组成,这些复制子编码结构蛋白,将复制子的基因组包裹起来,从而提供保护并促进病毒在宿主之间的传播。在虚拟复制子空间中,众多不同的复制子,如病毒衍生但无盖的 RNA 和 DNA 元件或缺陷病毒占据着正反球周围的区域。我们将这一区域定义为周球。尽管对装饰在病毒球内部和外部边界的某些复制子的性质的激烈争论可能会继续下去,但我们还是提出了最近被国际病毒分类委员会接受的病毒的操作性定义。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

Viruses Defined by the Position of the Virosphere within the Replicator Space.

Viruses Defined by the Position of the Virosphere within the Replicator Space.

Viruses Defined by the Position of the Virosphere within the Replicator Space.

Originally, viruses were defined as miniscule infectious agents that passed through filters that retain even the smallest cells. Subsequently, viruses were considered obligate intracellular parasites whose reproduction depends on their cellular hosts for energy supply and molecular building blocks. However, these features are insufficient to unambiguously define viruses as they are broadly understood today. We outline possible approaches to define viruses and explore the boundaries of the virosphere within the virtual space of replicators and the relationships between viruses and other types of replicators. Regardless of how, exactly, viruses are defined, viruses clearly have evolved on many occasions from nonviral replicators, such as plasmids, by recruiting host proteins to become virion components. Conversely, other types of replicators have repeatedly evolved from viruses. Thus, the virosphere is a dynamic entity with extensive evolutionary traffic across its boundaries. We argue that the virosphere proper, here termed orthovirosphere, consists of a distinct variety of replicators that encode structural proteins encasing the replicators' genomes, thereby providing protection and facilitating transmission among hosts. Numerous and diverse replicators, such as virus-derived but capsidless RNA and DNA elements, or defective viruses occupy the zone surrounding the orthovirosphere in the virtual replicator space. We define this zone as the perivirosphere. Although intense debates on the nature of certain replicators that adorn the internal and external boundaries of the virosphere will likely continue, we present an operational definition of virus that recently has been accepted by the International Committee on Taxonomy of Viruses.

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来源期刊
CiteScore
18.80
自引率
0.80%
发文量
27
期刊介绍: Microbiology and Molecular Biology Reviews (MMBR), a journal that explores the significance and interrelationships of recent discoveries in various microbiology fields, publishes review articles that help both specialists and nonspecialists understand and apply the latest findings in their own research. MMBR covers a wide range of topics in microbiology, including microbial ecology, evolution, parasitology, biotechnology, and immunology. The journal caters to scientists with diverse interests in all areas of microbial science and encompasses viruses, bacteria, archaea, fungi, unicellular eukaryotes, and microbial parasites. MMBR primarily publishes authoritative and critical reviews that push the boundaries of knowledge, appealing to both specialists and generalists. The journal often includes descriptive figures and tables to enhance understanding. Indexed/Abstracted in various databases such as Agricola, BIOSIS Previews, CAB Abstracts, Cambridge Scientific Abstracts, Chemical Abstracts Service, Current Contents- Life Sciences, EMBASE, Food Science and Technology Abstracts, Illustrata, MEDLINE, Science Citation Index Expanded (Web of Science), Summon, and Scopus, among others.
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