关于培养酵母和其他真菌的命名问题:为什么避免不必要的名称更改很重要。

IF 5.2 1区 生物学 Q1 MYCOLOGY
Andrey Yurkov, Artur Alves, Feng-Yan Bai, Kyria Boundy-Mills, Pietro Buzzini, Neža Čadež, Gianluigi Cardinali, Serge Casaregola, Vishnu Chaturvedi, Valérie Collin, Jack W Fell, Victoria Girard, Marizeth Groenewald, Ferry Hagen, Chris Todd Hittinger, Aleksey V Kachalkin, Markus Kostrzewa, Vassili Kouvelis, Diego Libkind, Xinzhan Liu, Thomas Maier, Wieland Meyer, Gábor Péter, Marcin Piątek, Vincent Robert, Carlos A Rosa, Jose Paulo Sampaio, Matthias Sipiczki, Marc Stadler, Takashi Sugita, Junta Sugiyama, Hiroshi Takagi, Masako Takashima, Benedetta Turchetti, Qi-Ming Wang, Teun Boekhout
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引用次数: 12

摘要

真菌名称的明确应用对科学发现的交流很重要。名称对于(临床)诊断、法律合规和监管控制(如生物安全、食品安全、检疫法规和工业应用)至关重要。因此,分类系统的稳定性和命名变化的可追溯性对广泛的用户和分类学家来说至关重要。通过保存命名历史和代表名称的物理有机体,可以确保名称的明确应用。真菌在生态学、生活方式和研究方法方面都极其多样化。主要的单细胞真菌被称为酵母,通常作为活的培养物进行研究。表征酵母的方法包括生理(生长)测试和诱导性形态的实验;两种方法都需要有活力的培养物。因此,有活力的参考培养物的保存和可用性是重要的,代表参考物质的培养物在物种描述中被引用。历史调查揭示了过去的做法与《国际藻类、真菌和植物命名规则》(ICNafp)中所述的现代要求之间的缺陷和不一致。酵母分类不当是一个常见的问题,导致大量无效的酵母物种名称。在这封意见信中,我们解决了可培养微生物,特别是一些真菌和藻类,需要在ICNafp下进行具体规定的问题。我们使用酵母作为从培养中已知的真菌的一个突出例子。但活菌型材料不仅对酵母很重要,对其他具有特定形态结构(一种特定类型的孢子)、生长特性和次生代谢产物的可培养真菌也很重要。我们总结了潜在的建议,在我们看来,这些建议将提高真菌名称的稳定性,特别是通过保护那些参考材料可以追溯到原始分离物的名称。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Nomenclatural issues concerning cultured yeasts and other fungi: why it is important to avoid unneeded name changes.

The unambiguous application of fungal names is important to communicate scientific findings. Names are critical for (clinical) diagnostics, legal compliance, and regulatory controls, such as biosafety, food security, quarantine regulations, and industrial applications. Consequently, the stability of the taxonomic system and the traceability of nomenclatural changes is crucial for a broad range of users and taxonomists. The unambiguous application of names is assured by the preservation of nomenclatural history and the physical organisms representing a name. Fungi are extremely diverse in terms of ecology, lifestyle, and methods of study. Predominantly unicellular fungi known as yeasts are usually investigated as living cultures. Methods to characterize yeasts include physiological (growth) tests and experiments to induce a sexual morph; both methods require viable cultures. Thus, the preservation and availability of viable reference cultures are important, and cultures representing reference material are cited in species descriptions. Historical surveys revealed drawbacks and inconsistencies between past practices and modern requirements as stated in the International Code of Nomenclature for Algae, Fungi, and Plants (ICNafp). Improper typification of yeasts is a common problem, resulting in a large number invalid yeast species names. With this opinion letter, we address the problem that culturable microorganisms, notably some fungi and algae, require specific provisions under the ICNafp. We use yeasts as a prominent example of fungi known from cultures. But viable type material is important not only for yeasts, but also for other cultivable Fungi that are characterized by particular morphological structures (a specific type of spores), growth properties, and secondary metabolites. We summarize potential proposals which, in our opinion, will improve the stability of fungal names, in particular by protecting those names for which the reference material can be traced back to the original isolate.

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来源期刊
Ima Fungus
Ima Fungus Agricultural and Biological Sciences-Agricultural and Biological Sciences (miscellaneous)
CiteScore
11.00
自引率
3.70%
发文量
18
审稿时长
20 weeks
期刊介绍: The flagship journal of the International Mycological Association. IMA Fungus is an international, peer-reviewed, open-access, full colour, fast-track journal. Papers on any aspect of mycology are considered, and published on-line with final pagination after proofs have been corrected; they are then effectively published under the International Code of Nomenclature for algae, fungi, and plants. The journal strongly supports good practice policies, and requires voucher specimens or cultures to be deposited in a public collection with an online database, DNA sequences in GenBank, alignments in TreeBASE, and validating information on new scientific names, including typifications, to be lodged in MycoBank. News, meeting reports, personalia, research news, correspondence, book news, and information on forthcoming international meetings are included in each issue
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