Elciomar Araújo De Oliveira, Marcos Penhacek, Karen Larissa Auzier Guimarães, Gessica Amorim do Nascimento, Luís Reginaldo Ribeiro Rodrigues, Emil José Hernández-Ruz
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In this study, we applied the Automatic Barcode Gap Discovery (ABGD) algorithm for the delimitation of candidate species and values of genetic distances using the mitochondrial marker Cytochrome Oxidase Subunit I (COI), proposed in the barcode methodology, where values greater than 10% are considered as indicative of different species. We found large genetic distances between <i>P. latro</i> and <i>Pristimantis</i> sp1 Unconfirmed Candidate Species - UCS1 (21%), and between <i>P. altamazonicus</i> and <i>Pristimantis</i> sp2 UCS2 (14%). The ABGD method recognized UCS1 and UCS2 as distinct species. <i>Pristimantis</i> sp. UCS1 and UCS2 in the east of the Brazilian Amazon are indicated as candidate species. We suggest greater sampling of <i>Pristimantis</i> sp. UCS1 and UCS2, integrating morphology and bioacoustics to solve the taxonomic status in the east of the Brazilian Amazon.</p>","PeriodicalId":74204,"journal":{"name":"Mitochondrial DNA. 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引用次数: 2
摘要
在所有陆生脊椎动物中,棱镜属的物种多样性最高,在安第斯地区和圭亚那地盾观察到的物种最多。即使是最近对新物种的描述,在亚马逊河以南也只有p.a latro, p.d dundei和p.s zimmermanae。由于缺乏专门从事该领域的分类学家,导致了可疑术语(如Pristimantis sp1, Pristimantis sp2, P. aff. Fenestratus和P. gr. illatus)的传播,甚至导致了物种的错误识别,从而导致了错误的物种分布。在这项研究中,我们应用了自动条形码缺口发现(ABGD)算法来划分候选物种,并使用条形码方法中提出的线粒体标记细胞色素氧化酶亚单位I (COI)的遗传距离值,其中值大于10%被认为是不同物种的指示值。我们发现,P. latro与Pristimantis sp1 Unconfirmed Candidate Species - UCS1之间的遗传距离较大(21%),P. altamazonicus与Pristimantis sp2 UCS2之间的遗传距离较大(14%)。ABGD方法将UCS1和UCS2识别为不同的种。巴西亚马逊东部的Pristimantis sp. UCS1和UCS2为候选种。我们建议在巴西亚马孙东部加大对Pristimantis sp. UCS1和UCS2的采样,结合形态学和生物声学来解决该地区的分类问题。
Pristimantis in the Eastern Brazilian Amazon: DNA barcoding reveals underestimated diversity in a megadiverse genus.
The genus Pristimantis has the highest species diversity among all terrestrial vertebrates, with most species observed in the Andean region and the Guiana Shield. Even with the recent description of a new species, only P. latro, P. dundeei and P. zimmermanae occur in the south of the Amazon River. The lack of taxonomists specialized in the field leads to the propagation of dubious terminologies (e.g. Pristimantis sp1, Pristimantis sp2, P. aff. Fenestratus and P. gr. conspicillatus) or even misidentification of species, resulting in erroneous species distributions. In this study, we applied the Automatic Barcode Gap Discovery (ABGD) algorithm for the delimitation of candidate species and values of genetic distances using the mitochondrial marker Cytochrome Oxidase Subunit I (COI), proposed in the barcode methodology, where values greater than 10% are considered as indicative of different species. We found large genetic distances between P. latro and Pristimantis sp1 Unconfirmed Candidate Species - UCS1 (21%), and between P. altamazonicus and Pristimantis sp2 UCS2 (14%). The ABGD method recognized UCS1 and UCS2 as distinct species. Pristimantis sp. UCS1 and UCS2 in the east of the Brazilian Amazon are indicated as candidate species. We suggest greater sampling of Pristimantis sp. UCS1 and UCS2, integrating morphology and bioacoustics to solve the taxonomic status in the east of the Brazilian Amazon.