{"title":"昆虫博物馆标本的更新世后校准突变率。","authors":"Gideon Ney, Katy Frederick, Johannes Schul","doi":"10.1371/currents.tol.aba557de56be881793261f7e1565cf35","DOIUrl":null,"url":null,"abstract":"<p><p>Quantifying the age of recent species divergence events can be challenging in the absence of calibration points within many groups. The katydid species <i>Neoconocephalus lyristes</i> provides the opportunity to calibrate a post-Pleistocene, taxa specific mutation rate using a known biogeographic event, the Mohawk-Hudson Divide. DNA was extracted from pinned museum specimens of <i>N. lyristes</i> from both Midwest and Atlantic populations and the mitochondrial gene COI sequenced using primers designed from extant specimens. Coalescent analyses using both strict and relaxed molecular clock models were performed in BEAST v1.8.2. The assumption of a strict molecular clock could not be rejected in favor of the relaxed clock model as the distribution of the standard deviation of the clock rate strongly abutted zero. The strict molecular clock model resulted in an intraspecific calculated mutation rate of 14.4-17.3 %/myr, a rate substantially higher than the common rates of sequence evolution observed for insect mitochondrial DNA sequences. The rate, however, aligns closely with mutation rates estimated from other taxa with similarly recent lineage divergence times.</p>","PeriodicalId":74464,"journal":{"name":"PLoS currents","volume":"10 ","pages":""},"PeriodicalIF":0.0000,"publicationDate":"2018-07-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6072552/pdf/","citationCount":"12","resultStr":"{\"title\":\"A Post-pleistocene Calibrated Mutation Rate from Insect Museum Specimens.\",\"authors\":\"Gideon Ney, Katy Frederick, Johannes Schul\",\"doi\":\"10.1371/currents.tol.aba557de56be881793261f7e1565cf35\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><p>Quantifying the age of recent species divergence events can be challenging in the absence of calibration points within many groups. The katydid species <i>Neoconocephalus lyristes</i> provides the opportunity to calibrate a post-Pleistocene, taxa specific mutation rate using a known biogeographic event, the Mohawk-Hudson Divide. DNA was extracted from pinned museum specimens of <i>N. lyristes</i> from both Midwest and Atlantic populations and the mitochondrial gene COI sequenced using primers designed from extant specimens. Coalescent analyses using both strict and relaxed molecular clock models were performed in BEAST v1.8.2. The assumption of a strict molecular clock could not be rejected in favor of the relaxed clock model as the distribution of the standard deviation of the clock rate strongly abutted zero. The strict molecular clock model resulted in an intraspecific calculated mutation rate of 14.4-17.3 %/myr, a rate substantially higher than the common rates of sequence evolution observed for insect mitochondrial DNA sequences. The rate, however, aligns closely with mutation rates estimated from other taxa with similarly recent lineage divergence times.</p>\",\"PeriodicalId\":74464,\"journal\":{\"name\":\"PLoS currents\",\"volume\":\"10 \",\"pages\":\"\"},\"PeriodicalIF\":0.0000,\"publicationDate\":\"2018-07-13\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6072552/pdf/\",\"citationCount\":\"12\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"PLoS currents\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://doi.org/10.1371/currents.tol.aba557de56be881793261f7e1565cf35\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"\",\"JCRName\":\"\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"PLoS currents","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.1371/currents.tol.aba557de56be881793261f7e1565cf35","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"","JCRName":"","Score":null,"Total":0}
引用次数: 12
摘要
在许多群体中缺乏校准点的情况下,量化最近物种分化事件的年龄可能具有挑战性。利用已知的生物地理事件——莫霍克-哈德逊分水岭,katydid物种Neoconocephalus lyristes提供了校准更新世后分类群特定突变率的机会。从美国中西部和大西洋地区的lyristes N. lyristes博物馆标本中提取DNA,并使用从现存标本中设计的引物对线粒体基因COI进行测序。在BEAST v1.8.2中使用严格和宽松的分子钟模型进行聚结分析。由于时钟速率的标准偏差分布强烈地接近于零,因此不能拒绝严格分子钟的假设而支持宽松时钟模型。严格的分子钟模型导致种内计算突变率为14.4- 17.3% /myr,大大高于在昆虫线粒体DNA序列中观察到的常见序列进化率。然而,这一比率与其他类群的突变率非常接近,这些类群具有相似的谱系分化时间。
A Post-pleistocene Calibrated Mutation Rate from Insect Museum Specimens.
Quantifying the age of recent species divergence events can be challenging in the absence of calibration points within many groups. The katydid species Neoconocephalus lyristes provides the opportunity to calibrate a post-Pleistocene, taxa specific mutation rate using a known biogeographic event, the Mohawk-Hudson Divide. DNA was extracted from pinned museum specimens of N. lyristes from both Midwest and Atlantic populations and the mitochondrial gene COI sequenced using primers designed from extant specimens. Coalescent analyses using both strict and relaxed molecular clock models were performed in BEAST v1.8.2. The assumption of a strict molecular clock could not be rejected in favor of the relaxed clock model as the distribution of the standard deviation of the clock rate strongly abutted zero. The strict molecular clock model resulted in an intraspecific calculated mutation rate of 14.4-17.3 %/myr, a rate substantially higher than the common rates of sequence evolution observed for insect mitochondrial DNA sequences. The rate, however, aligns closely with mutation rates estimated from other taxa with similarly recent lineage divergence times.