A. Hashimoto , K. Hirayama , H. Takahashi , M. Matsumura , G. Okada , C.Y. Chen , J.W. Huang , M. Kakishima , T. Ono , K. Tanaka
{"title":"解决龙舌兰双极复合体:龙舌兰科的属界划分","authors":"A. Hashimoto , K. Hirayama , H. Takahashi , M. Matsumura , G. Okada , C.Y. Chen , J.W. Huang , M. Kakishima , T. Ono , K. Tanaka","doi":"10.1016/j.simyco.2018.03.001","DOIUrl":null,"url":null,"abstract":"<div><p><em>Lophiostoma bipolare</em> was taxonomically revised based on the morphological observations and phylogenetic analyses of molecular data from nuclear rDNA SSU-ITS-LSU, <em>TUB</em>, <em>tef1</em>, and <em>rpb2</em> genes. Twenty-nine strains were morphologically similar to <em>Lo</em>. <em>bipolare</em>. A total of 174 sequences were generated from the <em>Lo</em>. <em>bipolare</em> complex. Phylogenetic analyses based on <em>TUB</em> sequence revealed 11 distinct species within the <em>Lo. bipolare</em> complex. Morphological features of the ascospores and the anatomical structure of the ascomata from both field collections as well as axenic culture, which have been reported previously as variable features at intraspecific levels, were compared to evaluate the taxonomic reliability of these features. To clarify the generic position of the 11 species, phylogenetic analyses were done on SSU-ITS-LSU-<em>tef1</em>-<em>rpb2</em> gene sequences. The <em>Lo</em>. <em>bipolare</em> complex shared phylogenetic relationships with <em>Pseudolophiostoma</em> and <em>Vaginatispora</em>, and formed an additional five distinct clades from other members of <em>Lophiostomataceae</em>. According to its phylogenetic position, <em>Lo. bipolare sensu stricto</em> was distantly related to <em>Lophiostoma</em> s. str., and formed an independent clade within <em>Lophiostomataceae. Lophiostoma bipolare</em> s. str. could be distinguished from the other lophiostomataceous genera by the clypeus around the ostiolar neck and by the thin and uniformly thick peridium. A novel genus described as <em>Lentistoma</em> was established to accommodate this species, and the epitypification of <em>Lentistoma bipolare</em> (basionym: <em>Massarina bipolaris</em>) was proposed. Other lineages of the <em>Lo. bipolare</em> complex could not be separated on the basis of the ascospore size and sheath variations, but were distinguished based on ascomatal features, such as the existence of the clypeus, brown hyphae surrounding the peridium, and the contexture of the peridium, which were stable indicators of generic boundaries in <em>Lophiostomataceae</em>. Four additional new genera with five new species were recognised based on these morphological differences: <em>Crassiclypeus</em> (<em>C</em>. <em>aquaticus</em>), <em>Flabellascoma</em> (<em>F</em>. <em>cycadicola</em> and <em>F</em>. <em>minimum</em>), <em>Leptoparies</em> (<em>Lep</em>. <em>palmarum</em>), and <em>Pseudopaucispora</em> (<em>Pseudop</em>. <em>brunneospora</em>). Three new species were added to <em>Pseudolophiostoma</em> (<em>Pseudol</em>. <em>cornisporum</em>, <em>Pseudol</em>. <em>obtusisporum</em>, and <em>Pseudol</em>. <em>tropicum</em>) and two new species were added to <em>Vaginatispora</em> (<em>V</em>. <em>amygdali</em> and <em>V</em>. <em>scabrispora</em>). The re-evaluation of the validity of several previously recognised genera resulted in the introduction of two new genera with new combinations for <em>Lophiostoma pseudoarmatisporum</em> as <em>Parapaucispora pseudoarmatispora</em> and <em>Vaginatispora fuckelii</em> as <em>Neovaginatispora fuckelii</em>.</p></div>","PeriodicalId":22036,"journal":{"name":"Studies in Mycology","volume":"90 ","pages":"Pages 161-189"},"PeriodicalIF":14.1000,"publicationDate":"2018-06-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1016/j.simyco.2018.03.001","citationCount":"27","resultStr":"{\"title\":\"Resolving the Lophiostoma bipolare complex: Generic delimitations within Lophiostomataceae\",\"authors\":\"A. Hashimoto , K. Hirayama , H. Takahashi , M. Matsumura , G. Okada , C.Y. Chen , J.W. Huang , M. Kakishima , T. Ono , K. Tanaka\",\"doi\":\"10.1016/j.simyco.2018.03.001\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<div><p><em>Lophiostoma bipolare</em> was taxonomically revised based on the morphological observations and phylogenetic analyses of molecular data from nuclear rDNA SSU-ITS-LSU, <em>TUB</em>, <em>tef1</em>, and <em>rpb2</em> genes. Twenty-nine strains were morphologically similar to <em>Lo</em>. <em>bipolare</em>. A total of 174 sequences were generated from the <em>Lo</em>. <em>bipolare</em> complex. Phylogenetic analyses based on <em>TUB</em> sequence revealed 11 distinct species within the <em>Lo. bipolare</em> complex. Morphological features of the ascospores and the anatomical structure of the ascomata from both field collections as well as axenic culture, which have been reported previously as variable features at intraspecific levels, were compared to evaluate the taxonomic reliability of these features. To clarify the generic position of the 11 species, phylogenetic analyses were done on SSU-ITS-LSU-<em>tef1</em>-<em>rpb2</em> gene sequences. The <em>Lo</em>. <em>bipolare</em> complex shared phylogenetic relationships with <em>Pseudolophiostoma</em> and <em>Vaginatispora</em>, and formed an additional five distinct clades from other members of <em>Lophiostomataceae</em>. According to its phylogenetic position, <em>Lo. bipolare sensu stricto</em> was distantly related to <em>Lophiostoma</em> s. str., and formed an independent clade within <em>Lophiostomataceae. Lophiostoma bipolare</em> s. str. could be distinguished from the other lophiostomataceous genera by the clypeus around the ostiolar neck and by the thin and uniformly thick peridium. A novel genus described as <em>Lentistoma</em> was established to accommodate this species, and the epitypification of <em>Lentistoma bipolare</em> (basionym: <em>Massarina bipolaris</em>) was proposed. Other lineages of the <em>Lo. bipolare</em> complex could not be separated on the basis of the ascospore size and sheath variations, but were distinguished based on ascomatal features, such as the existence of the clypeus, brown hyphae surrounding the peridium, and the contexture of the peridium, which were stable indicators of generic boundaries in <em>Lophiostomataceae</em>. Four additional new genera with five new species were recognised based on these morphological differences: <em>Crassiclypeus</em> (<em>C</em>. <em>aquaticus</em>), <em>Flabellascoma</em> (<em>F</em>. <em>cycadicola</em> and <em>F</em>. <em>minimum</em>), <em>Leptoparies</em> (<em>Lep</em>. <em>palmarum</em>), and <em>Pseudopaucispora</em> (<em>Pseudop</em>. <em>brunneospora</em>). Three new species were added to <em>Pseudolophiostoma</em> (<em>Pseudol</em>. <em>cornisporum</em>, <em>Pseudol</em>. <em>obtusisporum</em>, and <em>Pseudol</em>. <em>tropicum</em>) and two new species were added to <em>Vaginatispora</em> (<em>V</em>. <em>amygdali</em> and <em>V</em>. <em>scabrispora</em>). The re-evaluation of the validity of several previously recognised genera resulted in the introduction of two new genera with new combinations for <em>Lophiostoma pseudoarmatisporum</em> as <em>Parapaucispora pseudoarmatispora</em> and <em>Vaginatispora fuckelii</em> as <em>Neovaginatispora fuckelii</em>.</p></div>\",\"PeriodicalId\":22036,\"journal\":{\"name\":\"Studies in Mycology\",\"volume\":\"90 \",\"pages\":\"Pages 161-189\"},\"PeriodicalIF\":14.1000,\"publicationDate\":\"2018-06-01\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://sci-hub-pdf.com/10.1016/j.simyco.2018.03.001\",\"citationCount\":\"27\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Studies in Mycology\",\"FirstCategoryId\":\"99\",\"ListUrlMain\":\"https://www.sciencedirect.com/science/article/pii/S0166061618300083\",\"RegionNum\":1,\"RegionCategory\":\"生物学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q1\",\"JCRName\":\"MYCOLOGY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Studies in Mycology","FirstCategoryId":"99","ListUrlMain":"https://www.sciencedirect.com/science/article/pii/S0166061618300083","RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q1","JCRName":"MYCOLOGY","Score":null,"Total":0}
Resolving the Lophiostoma bipolare complex: Generic delimitations within Lophiostomataceae
Lophiostoma bipolare was taxonomically revised based on the morphological observations and phylogenetic analyses of molecular data from nuclear rDNA SSU-ITS-LSU, TUB, tef1, and rpb2 genes. Twenty-nine strains were morphologically similar to Lo. bipolare. A total of 174 sequences were generated from the Lo. bipolare complex. Phylogenetic analyses based on TUB sequence revealed 11 distinct species within the Lo. bipolare complex. Morphological features of the ascospores and the anatomical structure of the ascomata from both field collections as well as axenic culture, which have been reported previously as variable features at intraspecific levels, were compared to evaluate the taxonomic reliability of these features. To clarify the generic position of the 11 species, phylogenetic analyses were done on SSU-ITS-LSU-tef1-rpb2 gene sequences. The Lo. bipolare complex shared phylogenetic relationships with Pseudolophiostoma and Vaginatispora, and formed an additional five distinct clades from other members of Lophiostomataceae. According to its phylogenetic position, Lo. bipolare sensu stricto was distantly related to Lophiostoma s. str., and formed an independent clade within Lophiostomataceae. Lophiostoma bipolare s. str. could be distinguished from the other lophiostomataceous genera by the clypeus around the ostiolar neck and by the thin and uniformly thick peridium. A novel genus described as Lentistoma was established to accommodate this species, and the epitypification of Lentistoma bipolare (basionym: Massarina bipolaris) was proposed. Other lineages of the Lo. bipolare complex could not be separated on the basis of the ascospore size and sheath variations, but were distinguished based on ascomatal features, such as the existence of the clypeus, brown hyphae surrounding the peridium, and the contexture of the peridium, which were stable indicators of generic boundaries in Lophiostomataceae. Four additional new genera with five new species were recognised based on these morphological differences: Crassiclypeus (C. aquaticus), Flabellascoma (F. cycadicola and F. minimum), Leptoparies (Lep. palmarum), and Pseudopaucispora (Pseudop. brunneospora). Three new species were added to Pseudolophiostoma (Pseudol. cornisporum, Pseudol. obtusisporum, and Pseudol. tropicum) and two new species were added to Vaginatispora (V. amygdali and V. scabrispora). The re-evaluation of the validity of several previously recognised genera resulted in the introduction of two new genera with new combinations for Lophiostoma pseudoarmatisporum as Parapaucispora pseudoarmatispora and Vaginatispora fuckelii as Neovaginatispora fuckelii.
期刊介绍:
The international journal Studies in Mycology focuses on advancing the understanding of filamentous fungi, yeasts, and various aspects of mycology. It publishes comprehensive systematic monographs as well as topical issues covering a wide range of subjects including biotechnology, ecology, molecular biology, pathology, and systematics. This Open-Access journal offers unrestricted access to its content.
Each issue of Studies in Mycology consists of around 5 to 6 papers, either in the form of monographs or special focused topics. Unlike traditional length restrictions, the journal encourages submissions of manuscripts with a minimum of 50 A4 pages in print. This ensures a thorough exploration and presentation of the research findings, maximizing the depth of the published work.