综合生物信息学和机器学习策略发现PRDX6是心力衰竭的关键铁中毒相关分子生物学特征。

IF 16.4 1区 化学 Q1 CHEMISTRY, MULTIDISCIPLINARY
Chenyang Jiang, Weidong Jiang
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引用次数: 0

摘要

心力衰竭(HF)是全球人口死亡和公共卫生问题的主要原因。本研究旨在利用生物信息学和机器学习策略识别和验证临床医学中与HF相关的铁中毒相关生物标志物。采用加权共表达网络分析(Weighted co-expression network analysis, WGCNA)筛选模块基因,分析其生物学功能和通路。测定HF中嗜铁相关基因(FAG),然后使用机器学习算法进行筛选。接下来,使用多个外部独立微阵列来验证分子生物签名。同时,应用CIBERSORT对免疫浸润景观进行估算。结合WGCNA的结果,确定了25个fag,并通过机器学习策略选择了6个famb。此外,通过对独立数据集的多次验证,最终确定了过氧化氧还蛋白6 (peroxredoxin 6, PRDX6)作为嗜铁相关的关键分子生物学特征。从浸润富集分析的结果来看,我们认为PRDX6作为HF中与铁凋亡相关的保护性生物标志物,可能为HF的免疫治疗提供新的思路。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Integrated bioinformatics and machine learning strategies reveal PRDX6 as the key ferroptosis-associated molecular biosignature of heart failure.

Heart failure (HF) is the leading cause of death and public health problems in the global population. This study aimed to identify and validate ferroptosis-related biomarkers associated with HF in clinical medicine using bioinformatics and machine learning strategies. Weighted co-expression network analysis (WGCNA) was applied to screen the module genes and analyze their biological functions and pathways. Ferroptosis-associated genes (FAG) in HF were determined and then machine learning algorithms were used for screening. Next, multiple external independent microarrays were used to verify molecular biosignature. Simultaneously, CIBERSORT was applied to estimate the immune infiltration landscape. Combined with the results of the WGCNA, 25 FAGs were determined and 6 FAMBs were selected by machine learning strategies. In addition, Peroxiredoxin 6 (PRDX6) was finally selected as the key ferroptosis-associated molecular biological feature based on multiple verifications of independent data sets. From the results of the infiltration and enrichment analysis, we believed that PRDX6, as a protective biomarker related to ferroptosis in HF, may help provide new ideas in the immunotherapy of HF.

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来源期刊
Accounts of Chemical Research
Accounts of Chemical Research 化学-化学综合
CiteScore
31.40
自引率
1.10%
发文量
312
审稿时长
2 months
期刊介绍: Accounts of Chemical Research presents short, concise and critical articles offering easy-to-read overviews of basic research and applications in all areas of chemistry and biochemistry. These short reviews focus on research from the author’s own laboratory and are designed to teach the reader about a research project. In addition, Accounts of Chemical Research publishes commentaries that give an informed opinion on a current research problem. Special Issues online are devoted to a single topic of unusual activity and significance. Accounts of Chemical Research replaces the traditional article abstract with an article "Conspectus." These entries synopsize the research affording the reader a closer look at the content and significance of an article. Through this provision of a more detailed description of the article contents, the Conspectus enhances the article's discoverability by search engines and the exposure for the research.
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