增加函数式编程对生物信息学和科学界的可访问性的开源沙盒。

Matthew Fenwick, Colbert Sesanker, Martin R Schiller, Heidi Jc Ellis, M Lee Hinman, Jay Vyas, Michael R Gryk
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引用次数: 0

摘要

科学家们一直面临着用代码表达复杂数学概念的需要。函数式语言(如LISP和Haskell)的复兴通常归功于它们以表达性和自然的习惯用法实现复杂数据操作和数学结构的能力。然而,功能计算在科学界的缓慢采用并不能反映这些领域的相似性。不幸的是,采用函数式编程技术的学习曲线比科学社区中更传统的语言(如Python和Java)更陡峭,部分原因是可用的学习资源相对较少。为了填补这一空白,我们展示并提供了应用的、科学的、实质性的函数式编程的例子,我们提出了一个多语言的源代码库,用于软件集成和算法开发,通常侧重于机器学习、数据处理、生物信息学等领域。我们鼓励有兴趣学习函数式编程基础知识的科学家采用、重用并从这些示例中学习。源代码可从https://github.com/CONNJUR/CONNJUR-Sandbox(另请参阅http://www.connjur.org)获得。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
An Open-Source Sandbox for Increasing the Accessibility of Functional Programming to the Bioinformatics and Scientific Communities.

Scientists are continually faced with the need to express complex mathematical notions in code. The renaissance of functional languages such as LISP and Haskell is often credited to their ability to implement complex data operations and mathematical constructs in an expressive and natural idiom. The slow adoption of functional computing in the scientific community does not, however, reflect the congeniality of these fields. Unfortunately, the learning curve for adoption of functional programming techniques is steeper than that for more traditional languages in the scientific community, such as Python and Java, and this is partially due to the relative sparseness of available learning resources. To fill this gap, we demonstrate and provide applied, scientifically substantial examples of functional programming, We present a multi-language source-code repository for software integration and algorithm development, which generally focuses on the fields of machine learning, data processing, bioinformatics. We encourage scientists who are interested in learning the basics of functional programming to adopt, reuse, and learn from these examples. The source code is available at: https://github.com/CONNJUR/CONNJUR-Sandbox (see also http://www.connjur.org).

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