{"title":"北方Sheatfish (Silurus soldatovi)两个种群微卫星DNA的遗传多态性","authors":"QUAN Ying-Chun , SUN Xiao-Wen , LIANG Li-Qun","doi":"10.1016/S0379-4172(06)60125-X","DOIUrl":null,"url":null,"abstract":"<div><p>In this article, population variations and genetic structures of two populations of northern sheatfish (<em>Silurus soldatovi</em>) were analyzed using 24 microsatellite loci enriched from southern catfish (<em>S. meriaionalis</em> Chen) by magnetic beads. Gene frequency (<em>P</em>), observed heterozygosity (<em>Ho</em>), expected heterozygosity (<em>He</em>), polymorphism information contents (<em>PIC</em>), and number of effective alleles (<em>Ne</em>) were determined. One population was wild, ripe individuals collected from Heilongjiang River (<em>HNS</em>); the other was cultured fry collected from Songhuajiang River (<em>SNS</em>). The Hardy-Weinberg equilibrium (HWE) was tested by the genetic departure index (<em>d</em>). The coefficient of gene differentiation <em>G<sub>ST</sub></em> and Φ<sub><em>ST</em></sub> by AMOVA (Analysis of Molecular Variety) was imputed using Arlequin software in this study. In addition, a phylogenetic tree was constructed by UPGMA method based on the pairwise Nei's standard distances using PHYLIP. A total of 1 357 fragments with sizes ranging between 102 bp and 385 bp were acquired by PCR amplifications. The average number of alleles of the two populations was 8.875. Results indicated that these microsatellite loci were highly polymorphic and could be used as genetic markers. The mean values of the parameters <em>P, Ho, He, PIC,</em> and <em>Ne</em> were 0.165, 0.435, 0.758, 0.742, and 5.019 for <em>HNS</em> and 0.147, 0.299, 0.847, 0.764, and 5.944 for <em>SNS</em>, respectively. Although there were differences, there were no significant differentiations except for the locus <em>HLJcf37</em>. These populations to a certain extent deviated from HWE, such as excessive and deficient heterozygote numbers. The value of <em>G<sub>ST</sub></em> was 0.078 and above 98% of the variation were differences among individuals within the population, so the variation between populations was insignificant. Cluster analysis also showed that the relationships among individuals were very close. In conclusion, the microsatellite markers that were developed through this study are useful for genetic analysis and the genetic culture that was proposed in this study has no significant impact on <em>S. soldatovi</em>.</p></div>","PeriodicalId":100017,"journal":{"name":"Acta Genetica Sinica","volume":null,"pages":null},"PeriodicalIF":0.0000,"publicationDate":"2006-10-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1016/S0379-4172(06)60125-X","citationCount":"14","resultStr":"{\"title\":\"Genetic Polymorphism of Microsatellite DNA in Two Populations of Northern Sheatfish (Silurus soldatovi)\",\"authors\":\"QUAN Ying-Chun , SUN Xiao-Wen , LIANG Li-Qun\",\"doi\":\"10.1016/S0379-4172(06)60125-X\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<div><p>In this article, population variations and genetic structures of two populations of northern sheatfish (<em>Silurus soldatovi</em>) were analyzed using 24 microsatellite loci enriched from southern catfish (<em>S. meriaionalis</em> Chen) by magnetic beads. Gene frequency (<em>P</em>), observed heterozygosity (<em>Ho</em>), expected heterozygosity (<em>He</em>), polymorphism information contents (<em>PIC</em>), and number of effective alleles (<em>Ne</em>) were determined. One population was wild, ripe individuals collected from Heilongjiang River (<em>HNS</em>); the other was cultured fry collected from Songhuajiang River (<em>SNS</em>). The Hardy-Weinberg equilibrium (HWE) was tested by the genetic departure index (<em>d</em>). The coefficient of gene differentiation <em>G<sub>ST</sub></em> and Φ<sub><em>ST</em></sub> by AMOVA (Analysis of Molecular Variety) was imputed using Arlequin software in this study. In addition, a phylogenetic tree was constructed by UPGMA method based on the pairwise Nei's standard distances using PHYLIP. A total of 1 357 fragments with sizes ranging between 102 bp and 385 bp were acquired by PCR amplifications. The average number of alleles of the two populations was 8.875. Results indicated that these microsatellite loci were highly polymorphic and could be used as genetic markers. The mean values of the parameters <em>P, Ho, He, PIC,</em> and <em>Ne</em> were 0.165, 0.435, 0.758, 0.742, and 5.019 for <em>HNS</em> and 0.147, 0.299, 0.847, 0.764, and 5.944 for <em>SNS</em>, respectively. Although there were differences, there were no significant differentiations except for the locus <em>HLJcf37</em>. These populations to a certain extent deviated from HWE, such as excessive and deficient heterozygote numbers. The value of <em>G<sub>ST</sub></em> was 0.078 and above 98% of the variation were differences among individuals within the population, so the variation between populations was insignificant. Cluster analysis also showed that the relationships among individuals were very close. In conclusion, the microsatellite markers that were developed through this study are useful for genetic analysis and the genetic culture that was proposed in this study has no significant impact on <em>S. soldatovi</em>.</p></div>\",\"PeriodicalId\":100017,\"journal\":{\"name\":\"Acta Genetica Sinica\",\"volume\":null,\"pages\":null},\"PeriodicalIF\":0.0000,\"publicationDate\":\"2006-10-01\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://sci-hub-pdf.com/10.1016/S0379-4172(06)60125-X\",\"citationCount\":\"14\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Acta Genetica Sinica\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://www.sciencedirect.com/science/article/pii/S037941720660125X\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"\",\"JCRName\":\"\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Acta Genetica Sinica","FirstCategoryId":"1085","ListUrlMain":"https://www.sciencedirect.com/science/article/pii/S037941720660125X","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"","JCRName":"","Score":null,"Total":0}
Genetic Polymorphism of Microsatellite DNA in Two Populations of Northern Sheatfish (Silurus soldatovi)
In this article, population variations and genetic structures of two populations of northern sheatfish (Silurus soldatovi) were analyzed using 24 microsatellite loci enriched from southern catfish (S. meriaionalis Chen) by magnetic beads. Gene frequency (P), observed heterozygosity (Ho), expected heterozygosity (He), polymorphism information contents (PIC), and number of effective alleles (Ne) were determined. One population was wild, ripe individuals collected from Heilongjiang River (HNS); the other was cultured fry collected from Songhuajiang River (SNS). The Hardy-Weinberg equilibrium (HWE) was tested by the genetic departure index (d). The coefficient of gene differentiation GST and ΦST by AMOVA (Analysis of Molecular Variety) was imputed using Arlequin software in this study. In addition, a phylogenetic tree was constructed by UPGMA method based on the pairwise Nei's standard distances using PHYLIP. A total of 1 357 fragments with sizes ranging between 102 bp and 385 bp were acquired by PCR amplifications. The average number of alleles of the two populations was 8.875. Results indicated that these microsatellite loci were highly polymorphic and could be used as genetic markers. The mean values of the parameters P, Ho, He, PIC, and Ne were 0.165, 0.435, 0.758, 0.742, and 5.019 for HNS and 0.147, 0.299, 0.847, 0.764, and 5.944 for SNS, respectively. Although there were differences, there were no significant differentiations except for the locus HLJcf37. These populations to a certain extent deviated from HWE, such as excessive and deficient heterozygote numbers. The value of GST was 0.078 and above 98% of the variation were differences among individuals within the population, so the variation between populations was insignificant. Cluster analysis also showed that the relationships among individuals were very close. In conclusion, the microsatellite markers that were developed through this study are useful for genetic analysis and the genetic culture that was proposed in this study has no significant impact on S. soldatovi.
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