转录组学分析揭示弓形虫GRA72参与膜相关功能和代谢稳态

IF 1.5 3区 农林科学 Q4 PARASITOLOGY
Xin-Sheng Lu, Xing Tian, Jing Li, Chen-Ran Tian, Xing-Quan Zhu, Xiao-Nan Zheng
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引用次数: 0

摘要

刚地弓形虫是一种广泛传播的专性细胞内寄生虫,感染了世界上大约三分之一的人口。虽然健康人的感染通常是无症状或轻微的,但寄生虫对特定人群构成严重威胁。免疫功能低下的个体(如艾滋病患者和器官移植受者)有可能患上危及生命的弓形虫性脑炎,怀孕期间的先天性感染可导致胎儿流产或新生儿出现严重的神经和视力缺陷。gr72是弓形虫分泌的致密颗粒蛋白之一,已知定位于寄生物液泡膜(PVM)和寄生物液泡(PV)。尽管GRA72对PVM通透性、PV形态、速殖子生长和毒力很重要,但其对寄生虫整体转录及其潜在的相互作用或补偿蛋白的影响尚不清楚。方法对预先构建的弓形虫gr72基因敲除菌株(PruΔgra72)和野生型Pru菌株进行高通量RNA测序(RNA-seq),比较其整体基因表达的差异。鉴定了差异表达基因(DEGs),并进行了功能注释和途径富集分析。基于GO标注和标准分类系统进行基因本体(GO)富集分析。利用京都基因与基因组百科全书(KEGG)数据库确定与这些deg相关的主要代谢和信号通路。RNA-seq结果通过定量逆转录聚合酶链反应(RT-qPCR)验证。结果通过rna -seq分析,PruΔgra72菌株与野生型菌株相比,共鉴定出858个deg,其中上调550个,下调308个。在PruΔgra72中观察到慢殖子相关基因的上调,而致密颗粒蛋白(GRAs)的表达则呈现双向调控。RT-qPCR分析验证了RNA-seq数据。氧化石墨烯富集分析显示,在膜相关功能类别中,DEGs显著富集。KEGG通路分析表明,deg在关键代谢途径中显著富集,包括脂肪酸、碳和氨基酸代谢。结论本研究为弓形虫致病机制的研究提供了新的视角,揭示了gr72调控膜相关功能和代谢稳态。观察到的转录变化,特别是慢殖子基因的上调和GRAs表达的改变,表明GRA72可能在寄生虫发育中起重要作用。进一步研究与膜功能和重编程代谢相关的代偿性或相互作用的上游/下游基因(脂肪酸、碳、氨基酸)将阐明GRA72的分子机制,并有助于开发新的抗弓形虫治疗方法。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Toxoplasma GRA72 is Involved in Membrane-Associated Functions and Metabolic Homeostasis Revealed by Transcriptomic Analysis

Background

Toxoplasma gondii is a widely disseminated obligate intracellular parasite, infecting approximately one-third of the world human population. While infections in healthy individuals are typically asymptomatic or mild, the parasite poses a serious threat to specific populations. Immunocompromised individuals (such as AIDS patients and organ transplant recipients) risk life-threatening toxoplasmic encephalitis, and congenital infection during pregnancy can lead to fetal loss or severe neurological and ocular defects in newborns. GRA72, one of the dense granule proteins secreted by T. gondii, is known to localize to the parasitophorous vacuole membrane (PVM) and parasitophorous vacuole (PV). Though important for PVM permeability, PV morphology, tachyzoite growth, and virulence, GRA72’s imapct on the global parasite transcription and its potential interacting or compensatory proteins remains unclear.

Method

High-throughput RNA sequencing (RNA-seq) was performed on the pre-constructed T. gondii GRA72 gene knockout strain (PruΔgra72) and wild-type Pru strain to compare differences in global gene expression. Differentially expressed genes (DEGs) were identified and subjected to functional annotation and pathway enrichment analysis. Gene Ontology (GO) enrichment analysis were conducted based on GO annotation and the standard classification system. The Kyoto Encyclopedia of Genes and Genomes (KEGG) database was utilized to identify major metabolic and signaling pathways associated with these DEGs. RNA-seq results were verified by quantitative reverse transcription polymerase chain reaction (RT-qPCR).

Results

RNA-seq analysis identified 858 DEGs in PruΔgra72 strain compared to the wild-type strain, comprising 550 upregulated and 308 downregulated. Upregulation of bradyzoite associated genes were observed in PruΔgra72, while expression of dense granule proteins (GRAs) exhibited bidirectional regulation. RT-qPCR analysis validated the RNA-seq data. GO enrichment analysis revealed significantly enrichment of DEGs in membrane-related functional categories. KEGG pathway analysis indicated that the DEGs were significantly enriched in key metabolic pathways, including fatty acid, carbon and amino acid metabolism.

Conclusion

This study provide a new perspective for studying the pathogenic mechanisms of T. gondii, revealing that GRA72 modulates membrane-associated functions and metabolic homeostasis. The observed transcriptional changes, particularly the upregulation of bradyzoite genes and altered expression of GRAs, suggest that GRA72 may play an important role in parasite development. Further investigation of the compensatory or interacting upstream/downstream genes associated with membrane function and reprogrammed metabolism (fatty acid, carbon, amino acid) will elucidate GRA72’s molecular mechanisms and could facilitate the development of novel anti-Toxoplasma therapeutics.

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来源期刊
Acta Parasitologica
Acta Parasitologica 医学-寄生虫学
CiteScore
3.10
自引率
6.70%
发文量
149
审稿时长
6-12 weeks
期刊介绍: Acta Parasitologica is an international journal covering the latest advances in the subject. Acta Parasitologica publishes original papers on all aspects of parasitology and host-parasite relationships, including the latest discoveries in biochemical and molecular biology of parasites, their physiology, morphology, taxonomy and ecology, as well as original research papers on immunology, pathology, and epidemiology of parasitic diseases in the context of medical, veterinary and biological sciences. The journal also publishes short research notes, invited review articles, book reviews. The journal was founded in 1953 as "Acta Parasitologica Polonica" by the Polish Parasitological Society and since 1954 has been published by W. Stefanski Institute of Parasitology of the Polish Academy of Sciences in Warsaw. Since 1992 in has appeared as Acta Parasitologica in four issues per year.
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