腹主动脉瘤中性粒细胞胞外陷阱中心基因:生物信息学分析。

IF 2.6 3区 生物学
Jinxin Liu, Bixuan Yue, Zhiying Shen, Bo Yang, Yuxuan Ou, Xiaowu Wang
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引用次数: 0

摘要

目的:本研究旨在通过多种生物信息学方法鉴定AAA发生的关键基因,并探讨其潜在机制。方法:采用机器学习等方法筛选特征基因,利用ROC曲线在内外验证集中验证模型的性能。然后进行聚类分析和免疫浸润分析,最终确定两个关键基因并进行实验验证。进行GSEA、GO和KEGG分析。结果:用“limma”包鉴别出deg。将deg与net相交得到denet。GSEA、GO和KEGG分析显示,这些基因在细胞对脂多糖和趋化因子信号的反应等途径中富集。通过聚类分析比较25个denet在聚类间的表达差异,免疫浸润分析发现AAA中存在免疫失调,最终确定IL6和PADI4为denet,进一步GSEA分析发现它们与炎症和免疫应答有关。在湿法实验中,IL6和PADI4最终呈现出与生物信息学分析结果一致的表达趋势。结论:本研究确定IL6和PADI4为枢纽基因。它们在通过炎症促进AAA的发展中发挥重要作用,为未来进一步治疗和干预AAA提供了潜在的分子靶点。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Hub genes of neutrophil extracellular traps in abdominal aortic aneurysm: a bioinformatics analysis.

PURPOSE: This study aimed to identify the key genes involved in the development of AAA by various bioinformatics methods and explore their potential mechanisms. METHODS: Feature genes were screened by machine learning and other methods, and ROC curves were used to verify the model performance in the internal and external validation sets. Cluster analysis and immune infiltration analysis were then performed, and two key genes were finally determined and experimentally verified. GSEA, GO and KEGG analyses were performed. RESULTS: DEGs were identified by the “limma” package. DENETs were obtained by intersecting DEGs with NETs. GSEA, GO and KEGG analyses revealed that these genes were enriched in pathways such as cell response to lipopolysaccharide and chemokine signaling. Cluster analysis was performed to compare the expression differences of 25 DENETs between clusters, and immune infiltration analysis revealed immune dysregulation in AAA. Then, IL6 and PADI4 were finally identified as DENETs, and further GSEA analysis revealed that they were related to inflammation and immune response. In the wet experiment, IL6 and PADI4 finally showed expression trends consistent with the results of bioinformatics analysis. CONCLUSIONS: Our study identified IL6 and PADI4 as hub genes. They play an important role in promoting the development of AAA through inflammation, providing potential molecular targets for further treatment and intervention of AAA in the future.

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来源期刊
Hereditas
Hereditas Biochemistry, Genetics and Molecular Biology-Genetics
CiteScore
3.80
自引率
3.70%
发文量
0
期刊介绍: For almost a century, Hereditas has published original cutting-edge research and reviews. As the Official journal of the Mendelian Society of Lund, the journal welcomes research from across all areas of genetics and genomics. Topics of interest include human and medical genetics, animal and plant genetics, microbial genetics, agriculture and bioinformatics.
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