化学感受器活性随时间周期引诱剂场的动态变化

IF 2.2 4区 物理与天体物理 Q4 CHEMISTRY, PHYSICAL
Ramesh Pramanik, Ramu K. Yadav, Sakuntala Chatterjee
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引用次数: 0

摘要

当暴露于时间周期化学信号时,大肠杆菌细胞以类似的时间周期方式调节其受体活性。但是在应用信号和活动响应之间存在相位滞后。我们用数值模拟的方法研究了活动振幅和相位滞后随外加频率\(\omega \)的变化。振幅随着\(\omega \)的增大而增大,达到一个平台,然后在\(\omega \)大时再次减小。相位滞后随着\(\omega \)的增大而单调增大,当\(\omega \)较大时,相位滞后最终趋于\(3 \pi /2\)。活性不再是引诱剂信号的单值函数,在一个完整的时间段内绘制活性与引诱剂浓度的关系会产生一个循环。我们将环路面积作为\(\omega \)的函数进行监测,并找到大小分别为\(\omega \)的两个峰值和中间\(\omega \)值的一个急剧最小值。我们从与适应、活动切换和应用信号变化相关的时间尺度之间的相互作用来解释这些结果。特别是,对于非常大的\(\omega \),活动动力学的准平衡近似被打破,这在早期的研究中没有被探索。在此极限下进行了解析计算,结果与仿真结果吻合较好。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Dynamics of chemoreceptor activity with time-periodic attractant field

When exposed to a time-periodic chemical signal, an E.coli cell responds by modulating its receptor activity in a similar time-periodic manner. But there is a phase lag between the applied signal and activity response. We study the variation of activity amplitude and phase lag as a function of applied frequency \(\omega \), using numerical simulations. The amplitude increases with \(\omega \), reaches a plateau and then decreases again for large \(\omega \). The phase lag increases monotonically with \(\omega \) and finally saturates to \(3 \pi /2\) when \(\omega \) is large. The activity is no more a single-valued function of the attractant signal, and plotting activity vs attractant concentration over one complete time period generates a loop. We monitor the loop area as a function of \(\omega \) and find two peaks for small and large \(\omega \) and a sharp minimum at intermediate \(\omega \) values. We explain these results from an interplay between the timescales associated with adaptation, activity switching and applied signal variation. In particular, for very large \(\omega \) the quasi-equilibrium approximation for activity dynamics breaks down, which has not been explored in earlier studies. We perform analytical calculation in this limit and find good agreement with our simulation results.

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来源期刊
The European Physical Journal E
The European Physical Journal E CHEMISTRY, PHYSICAL-MATERIALS SCIENCE, MULTIDISCIPLINARY
CiteScore
2.60
自引率
5.60%
发文量
92
审稿时长
3 months
期刊介绍: EPJ E publishes papers describing advances in the understanding of physical aspects of Soft, Liquid and Living Systems. Soft matter is a generic term for a large group of condensed, often heterogeneous systems -- often also called complex fluids -- that display a large response to weak external perturbations and that possess properties governed by slow internal dynamics. Flowing matter refers to all systems that can actually flow, from simple to multiphase liquids, from foams to granular matter. Living matter concerns the new physics that emerges from novel insights into the properties and behaviours of living systems. Furthermore, it aims at developing new concepts and quantitative approaches for the study of biological phenomena. Approaches from soft matter physics and statistical physics play a key role in this research. The journal includes reports of experimental, computational and theoretical studies and appeals to the broad interdisciplinary communities including physics, chemistry, biology, mathematics and materials science.
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