Xulei Zuo, Yuxi Zhang, Xiaoyu Hou, Cong Zhang, Juan Zhang
{"title":"通过网络毒理学、机器学习和多维生物信息学分析探索6PPDQ暴露对银屑病的毒理学影响","authors":"Xulei Zuo, Yuxi Zhang, Xiaoyu Hou, Cong Zhang, Juan Zhang","doi":"10.1016/j.envpol.2025.127291","DOIUrl":null,"url":null,"abstract":"N-(1,3-Dimethylbutyl)-N′-phenyl-p-phenylenediamine quinone (6PPDQ), a derivative of the tire antioxidant 6-PPD, has recently emerged as an environmental contaminant of concern. This study employed a network toxicology framework to explore its potential role in psoriasis. Through in silico target prediction and disease database integration, 290 overlapping 6PPDQ–psoriasis targets were identified. Gene Ontology and KEGG pathway analyses implicated MAPK and TNF signaling, along with the IL-23/Th17 inflammatory axis—key pathways in psoriasis pathogenesis. Machine learning (LASSO and SVM-RFE) prioritized four core genes (CD3D, IRF7, NR3C1, HDAC1). These genes displayed markedly altered expression in psoriatic transcriptomes (GSE13355) and demonstrated strong diagnostic performance (AUC > 0.99). Immune infiltration analysis (ssGSEA) and single-cell RNA-seq data linked these genes to pro-inflammatory T-cells, dendritic cells (DCs), and keratinocytes in psoriatic lesions. Molecular docking revealed high-affinity binding of 6PPDQ to all four proteins, with NR3C1 exhibiting the strongest interaction (−8.1 kcal/mol). Molecular dynamics simulations confirmed the stability of this complex. An adverse outcome pathway model was established, linking 6PPDQ exposure to immune dysregulation in psoriasis via these core genes. Collectively, the findings suggest that 6PPDQ may exacerbate psoriasis by disrupting key immune-inflammatory regulators—particularly NR3C1—thereby offering mechanistic insights into how environmental pollutants contribute to disease progression.","PeriodicalId":311,"journal":{"name":"Environmental Pollution","volume":"70 1","pages":""},"PeriodicalIF":7.3000,"publicationDate":"2025-10-19","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Exploring the Toxicological Impact of 6PPDQ Exposure on Psoriasis through Network Toxicology, Machine Learning, and Multidimensional Bioinformatics Analysis\",\"authors\":\"Xulei Zuo, Yuxi Zhang, Xiaoyu Hou, Cong Zhang, Juan Zhang\",\"doi\":\"10.1016/j.envpol.2025.127291\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"N-(1,3-Dimethylbutyl)-N′-phenyl-p-phenylenediamine quinone (6PPDQ), a derivative of the tire antioxidant 6-PPD, has recently emerged as an environmental contaminant of concern. This study employed a network toxicology framework to explore its potential role in psoriasis. Through in silico target prediction and disease database integration, 290 overlapping 6PPDQ–psoriasis targets were identified. Gene Ontology and KEGG pathway analyses implicated MAPK and TNF signaling, along with the IL-23/Th17 inflammatory axis—key pathways in psoriasis pathogenesis. Machine learning (LASSO and SVM-RFE) prioritized four core genes (CD3D, IRF7, NR3C1, HDAC1). These genes displayed markedly altered expression in psoriatic transcriptomes (GSE13355) and demonstrated strong diagnostic performance (AUC > 0.99). Immune infiltration analysis (ssGSEA) and single-cell RNA-seq data linked these genes to pro-inflammatory T-cells, dendritic cells (DCs), and keratinocytes in psoriatic lesions. Molecular docking revealed high-affinity binding of 6PPDQ to all four proteins, with NR3C1 exhibiting the strongest interaction (−8.1 kcal/mol). Molecular dynamics simulations confirmed the stability of this complex. An adverse outcome pathway model was established, linking 6PPDQ exposure to immune dysregulation in psoriasis via these core genes. Collectively, the findings suggest that 6PPDQ may exacerbate psoriasis by disrupting key immune-inflammatory regulators—particularly NR3C1—thereby offering mechanistic insights into how environmental pollutants contribute to disease progression.\",\"PeriodicalId\":311,\"journal\":{\"name\":\"Environmental Pollution\",\"volume\":\"70 1\",\"pages\":\"\"},\"PeriodicalIF\":7.3000,\"publicationDate\":\"2025-10-19\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Environmental Pollution\",\"FirstCategoryId\":\"93\",\"ListUrlMain\":\"https://doi.org/10.1016/j.envpol.2025.127291\",\"RegionNum\":2,\"RegionCategory\":\"环境科学与生态学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q1\",\"JCRName\":\"ENVIRONMENTAL SCIENCES\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Environmental Pollution","FirstCategoryId":"93","ListUrlMain":"https://doi.org/10.1016/j.envpol.2025.127291","RegionNum":2,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q1","JCRName":"ENVIRONMENTAL SCIENCES","Score":null,"Total":0}
Exploring the Toxicological Impact of 6PPDQ Exposure on Psoriasis through Network Toxicology, Machine Learning, and Multidimensional Bioinformatics Analysis
N-(1,3-Dimethylbutyl)-N′-phenyl-p-phenylenediamine quinone (6PPDQ), a derivative of the tire antioxidant 6-PPD, has recently emerged as an environmental contaminant of concern. This study employed a network toxicology framework to explore its potential role in psoriasis. Through in silico target prediction and disease database integration, 290 overlapping 6PPDQ–psoriasis targets were identified. Gene Ontology and KEGG pathway analyses implicated MAPK and TNF signaling, along with the IL-23/Th17 inflammatory axis—key pathways in psoriasis pathogenesis. Machine learning (LASSO and SVM-RFE) prioritized four core genes (CD3D, IRF7, NR3C1, HDAC1). These genes displayed markedly altered expression in psoriatic transcriptomes (GSE13355) and demonstrated strong diagnostic performance (AUC > 0.99). Immune infiltration analysis (ssGSEA) and single-cell RNA-seq data linked these genes to pro-inflammatory T-cells, dendritic cells (DCs), and keratinocytes in psoriatic lesions. Molecular docking revealed high-affinity binding of 6PPDQ to all four proteins, with NR3C1 exhibiting the strongest interaction (−8.1 kcal/mol). Molecular dynamics simulations confirmed the stability of this complex. An adverse outcome pathway model was established, linking 6PPDQ exposure to immune dysregulation in psoriasis via these core genes. Collectively, the findings suggest that 6PPDQ may exacerbate psoriasis by disrupting key immune-inflammatory regulators—particularly NR3C1—thereby offering mechanistic insights into how environmental pollutants contribute to disease progression.
期刊介绍:
Environmental Pollution is an international peer-reviewed journal that publishes high-quality research papers and review articles covering all aspects of environmental pollution and its impacts on ecosystems and human health.
Subject areas include, but are not limited to:
• Sources and occurrences of pollutants that are clearly defined and measured in environmental compartments, food and food-related items, and human bodies;
• Interlinks between contaminant exposure and biological, ecological, and human health effects, including those of climate change;
• Contaminants of emerging concerns (including but not limited to antibiotic resistant microorganisms or genes, microplastics/nanoplastics, electronic wastes, light, and noise) and/or their biological, ecological, or human health effects;
• Laboratory and field studies on the remediation/mitigation of environmental pollution via new techniques and with clear links to biological, ecological, or human health effects;
• Modeling of pollution processes, patterns, or trends that is of clear environmental and/or human health interest;
• New techniques that measure and examine environmental occurrences, transport, behavior, and effects of pollutants within the environment or the laboratory, provided that they can be clearly used to address problems within regional or global environmental compartments.