{"title":"优化结核菌检测效率:利用基于retinanet的预处理技术进行小图像斑块分类。","authors":"Shwetha V, Barnini Banerjee, Vijaya Laxmi, Priya Kamath","doi":"10.1155/ijbi/3559598","DOIUrl":null,"url":null,"abstract":"<p><p>Tuberculosis (TB), caused by <i>Mycobacterium tuberculosis</i>, is a re-emerging disease that necessitates early and accurate detection. While Ziehl-Neelsen (ZN) staining is effective in highlighting bacterial morphology, automation significantly accelerates the diagnostic workflow. However, detecting TB bacilli-which are typically much smaller than white blood cells (WBCs)-in stained images remains a considerable challenge. This study leverages the ZNSM-iDB dataset, which comprises approximately 2000 publicly available images captured using different staining methods. Notably, 800 images are fully stained with the ZN technique. We propose a novel two-stage pipeline where a RetinaNet-based object detection model functions as a preprocessing step to localize and isolate TB bacilli and WBCs from ZN-stained images. To address the challenges posed by low spatial resolution and background interference, the RetinaNet model is enhanced with dilated convolutional layers to improve fine-grained feature extraction. This approach not only facilitates accurate detection of small objects but also achieves an average precision (AP) of 0.94 for WBCs and 0.97 for TB bacilli. Following detection, a patch-based convolutional neural network (CNN) classifier is employed to classify the extracted regions. The proposed CNN model achieves a remarkable classification accuracy of 93%, outperforming other traditional CNN architectures. This framework demonstrates a robust and scalable solution for automated TB screening using ZN-stained microscopy images.</p>","PeriodicalId":47063,"journal":{"name":"International Journal of Biomedical Imaging","volume":"2025 ","pages":"3559598"},"PeriodicalIF":1.3000,"publicationDate":"2025-10-05","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12515574/pdf/","citationCount":"0","resultStr":"{\"title\":\"Optimizing TB Bacteria Detection Efficiency: Utilizing RetinaNet-Based Preprocessing Techniques for Small Image Patch Classification.\",\"authors\":\"Shwetha V, Barnini Banerjee, Vijaya Laxmi, Priya Kamath\",\"doi\":\"10.1155/ijbi/3559598\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><p>Tuberculosis (TB), caused by <i>Mycobacterium tuberculosis</i>, is a re-emerging disease that necessitates early and accurate detection. While Ziehl-Neelsen (ZN) staining is effective in highlighting bacterial morphology, automation significantly accelerates the diagnostic workflow. However, detecting TB bacilli-which are typically much smaller than white blood cells (WBCs)-in stained images remains a considerable challenge. This study leverages the ZNSM-iDB dataset, which comprises approximately 2000 publicly available images captured using different staining methods. Notably, 800 images are fully stained with the ZN technique. We propose a novel two-stage pipeline where a RetinaNet-based object detection model functions as a preprocessing step to localize and isolate TB bacilli and WBCs from ZN-stained images. To address the challenges posed by low spatial resolution and background interference, the RetinaNet model is enhanced with dilated convolutional layers to improve fine-grained feature extraction. This approach not only facilitates accurate detection of small objects but also achieves an average precision (AP) of 0.94 for WBCs and 0.97 for TB bacilli. Following detection, a patch-based convolutional neural network (CNN) classifier is employed to classify the extracted regions. The proposed CNN model achieves a remarkable classification accuracy of 93%, outperforming other traditional CNN architectures. This framework demonstrates a robust and scalable solution for automated TB screening using ZN-stained microscopy images.</p>\",\"PeriodicalId\":47063,\"journal\":{\"name\":\"International Journal of Biomedical Imaging\",\"volume\":\"2025 \",\"pages\":\"3559598\"},\"PeriodicalIF\":1.3000,\"publicationDate\":\"2025-10-05\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12515574/pdf/\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"International Journal of Biomedical Imaging\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://doi.org/10.1155/ijbi/3559598\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"2025/1/1 0:00:00\",\"PubModel\":\"eCollection\",\"JCR\":\"Q2\",\"JCRName\":\"ENGINEERING, BIOMEDICAL\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"International Journal of Biomedical Imaging","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.1155/ijbi/3559598","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"2025/1/1 0:00:00","PubModel":"eCollection","JCR":"Q2","JCRName":"ENGINEERING, BIOMEDICAL","Score":null,"Total":0}
Optimizing TB Bacteria Detection Efficiency: Utilizing RetinaNet-Based Preprocessing Techniques for Small Image Patch Classification.
Tuberculosis (TB), caused by Mycobacterium tuberculosis, is a re-emerging disease that necessitates early and accurate detection. While Ziehl-Neelsen (ZN) staining is effective in highlighting bacterial morphology, automation significantly accelerates the diagnostic workflow. However, detecting TB bacilli-which are typically much smaller than white blood cells (WBCs)-in stained images remains a considerable challenge. This study leverages the ZNSM-iDB dataset, which comprises approximately 2000 publicly available images captured using different staining methods. Notably, 800 images are fully stained with the ZN technique. We propose a novel two-stage pipeline where a RetinaNet-based object detection model functions as a preprocessing step to localize and isolate TB bacilli and WBCs from ZN-stained images. To address the challenges posed by low spatial resolution and background interference, the RetinaNet model is enhanced with dilated convolutional layers to improve fine-grained feature extraction. This approach not only facilitates accurate detection of small objects but also achieves an average precision (AP) of 0.94 for WBCs and 0.97 for TB bacilli. Following detection, a patch-based convolutional neural network (CNN) classifier is employed to classify the extracted regions. The proposed CNN model achieves a remarkable classification accuracy of 93%, outperforming other traditional CNN architectures. This framework demonstrates a robust and scalable solution for automated TB screening using ZN-stained microscopy images.
期刊介绍:
The International Journal of Biomedical Imaging is managed by a board of editors comprising internationally renowned active researchers. The journal is freely accessible online and also offered for purchase in print format. It employs a web-based review system to ensure swift turnaround times while maintaining high standards. In addition to regular issues, special issues are organized by guest editors. The subject areas covered include (but are not limited to):
Digital radiography and tomosynthesis
X-ray computed tomography (CT)
Magnetic resonance imaging (MRI)
Single photon emission computed tomography (SPECT)
Positron emission tomography (PET)
Ultrasound imaging
Diffuse optical tomography, coherence, fluorescence, bioluminescence tomography, impedance tomography
Neutron imaging for biomedical applications
Magnetic and optical spectroscopy, and optical biopsy
Optical, electron, scanning tunneling/atomic force microscopy
Small animal imaging
Functional, cellular, and molecular imaging
Imaging assays for screening and molecular analysis
Microarray image analysis and bioinformatics
Emerging biomedical imaging techniques
Imaging modality fusion
Biomedical imaging instrumentation
Biomedical image processing, pattern recognition, and analysis
Biomedical image visualization, compression, transmission, and storage
Imaging and modeling related to systems biology and systems biomedicine
Applied mathematics, applied physics, and chemistry related to biomedical imaging
Grid-enabling technology for biomedical imaging and informatics