三种Camaenidae科(腹足目:Stylommatophora)的线粒体基因组:结构特征、密码子使用模式和系统发育意义。

IF 2.3 2区 生物学 Q2 ECOLOGY
Xing-Ming Ran, Hai-Yong He, Lin Yang, Jian-Kun Long, Zhi-Min Chang, Zhong Li, Junyi Gao, Xiang-Sheng Chen
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引用次数: 0

摘要

本研究对三种Camaenidae蜗牛(Acusta ravida, Bradybaena similaris和Trichobradybaena submissa)的线粒体全基因组进行了测序。每个有丝分裂基因组包含典型的37个基因(13个PCGs、22个trna和2个rrna),大多数trna形成三叶草结构(trnK、trnH、trnN、trnS1、trnS2和trnR除外)。与9个现存camaeniae有丝分裂基因组的比较分析表明:(1)线粒体基因的核苷酸组成明显向A和T倾斜;(2)大多数蛋白基因使用ATN启动密码子和TAA/T停止密码子;(3)以T/A结尾的同义密码子占主导地位。pr2图和中性图表明,基因突变压力和自然选择对密码子的使用都有影响。在系统发育上,这3个新测序的物种聚集在Camaenidae的brybaeninae,与先前的分类一致。结果支持湿虻科和土虻科为姐妹类群,并确定多虻科为熊虻科的姐妹分支。此外,它们也部分支持将萨摩及其亚属提升到亚科的地位。该研究丰富了Camaenidae科的有丝分裂基因组资源,为进一步研究Camaenidae科的密码子使用、适应进化和系统发育提供了基础数据。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

Mitochondrial Genomes of Three Species of the Family Camaenidae (Gastropoda: Stylommatophora): Structural Features, Codon Usage Patterns, and Phylogenetic Implications

Mitochondrial Genomes of Three Species of the Family Camaenidae (Gastropoda: Stylommatophora): Structural Features, Codon Usage Patterns, and Phylogenetic Implications

This study sequenced the complete mitochondrial genomes of three Camaenidae snail species (Acusta ravida, Bradybaena similaris, and Trichobradybaena submissa). Each mitogenome contained the typical 37 genes (13 PCGs, 22 tRNAs, and 2 rRNAs), with most tRNAs forming clover structures (except trnK, trnH, trnN, trnS1, trnS2, and trnR). Comparative analysis with nine existing Camaenidae mitogenomes revealed: (1) The nucleotide composition of mitochondrial genes was significantly skewed toward A and T; (2) Most protein genes used ATN start codons and TAA/T- stop codons; (3) Synonymous codons ending with T/A were dominant. Analyses (PR2-plot, neutrality plot) indicated codon usage was influenced by both mutation pressure and natural selection. Phylogenetically, the three newly sequenced species clustered within Bradybaeninae of Camaenidae, consistent with previous classifications. The results support Hygromiidae and Geomitridae as sister groups and identify Polygyridae as the sister clade to Camaenidae. Additionally, they also partially support elevating Satsuma and its subgenus to subfamily status. This study enriches mitogenomic resources for Camaenidae and provides foundational data for future research on codon usage, adaptive evolution, and phylogenetics within this family.

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来源期刊
CiteScore
4.40
自引率
3.80%
发文量
1027
审稿时长
3-6 weeks
期刊介绍: Ecology and Evolution is the peer reviewed journal for rapid dissemination of research in all areas of ecology, evolution and conservation science. The journal gives priority to quality research reports, theoretical or empirical, that develop our understanding of organisms and their diversity, interactions between them, and the natural environment. Ecology and Evolution gives prompt and equal consideration to papers reporting theoretical, experimental, applied and descriptive work in terrestrial and aquatic environments. The journal will consider submissions across taxa in areas including but not limited to micro and macro ecological and evolutionary processes, characteristics of and interactions between individuals, populations, communities and the environment, physiological responses to environmental change, population genetics and phylogenetics, relatedness and kin selection, life histories, systematics and taxonomy, conservation genetics, extinction, speciation, adaption, behaviour, biodiversity, species abundance, macroecology, population and ecosystem dynamics, and conservation policy.
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