{"title":"三种Camaenidae科(腹足目:Stylommatophora)的线粒体基因组:结构特征、密码子使用模式和系统发育意义。","authors":"Xing-Ming Ran, Hai-Yong He, Lin Yang, Jian-Kun Long, Zhi-Min Chang, Zhong Li, Junyi Gao, Xiang-Sheng Chen","doi":"10.1002/ece3.72282","DOIUrl":null,"url":null,"abstract":"<p>This study sequenced the complete mitochondrial genomes of three Camaenidae snail species (<i>Acusta ravida</i>, <i>Bradybaena similaris</i>, and <i>Trichobradybaena submissa</i>). Each mitogenome contained the typical 37 genes (13 PCGs, 22 tRNAs, and 2 rRNAs), with most tRNAs forming clover structures (except trnK, trnH, trnN, trnS1, trnS2, and trnR). Comparative analysis with nine existing Camaenidae mitogenomes revealed: (1) The nucleotide composition of mitochondrial genes was significantly skewed toward A and T; (2) Most protein genes used ATN start codons and TAA/T- stop codons; (3) Synonymous codons ending with T/A were dominant. Analyses (PR2-plot, neutrality plot) indicated codon usage was influenced by both mutation pressure and natural selection. Phylogenetically, the three newly sequenced species clustered within Bradybaeninae of Camaenidae, consistent with previous classifications. The results support Hygromiidae and Geomitridae as sister groups and identify Polygyridae as the sister clade to Camaenidae. Additionally, they also partially support elevating Satsuma and its subgenus to subfamily status. This study enriches mitogenomic resources for Camaenidae and provides foundational data for future research on codon usage, adaptive evolution, and phylogenetics within this family.</p>","PeriodicalId":11467,"journal":{"name":"Ecology and Evolution","volume":"15 10","pages":""},"PeriodicalIF":2.3000,"publicationDate":"2025-10-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12515985/pdf/","citationCount":"0","resultStr":"{\"title\":\"Mitochondrial Genomes of Three Species of the Family Camaenidae (Gastropoda: Stylommatophora): Structural Features, Codon Usage Patterns, and Phylogenetic Implications\",\"authors\":\"Xing-Ming Ran, Hai-Yong He, Lin Yang, Jian-Kun Long, Zhi-Min Chang, Zhong Li, Junyi Gao, Xiang-Sheng Chen\",\"doi\":\"10.1002/ece3.72282\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p>This study sequenced the complete mitochondrial genomes of three Camaenidae snail species (<i>Acusta ravida</i>, <i>Bradybaena similaris</i>, and <i>Trichobradybaena submissa</i>). Each mitogenome contained the typical 37 genes (13 PCGs, 22 tRNAs, and 2 rRNAs), with most tRNAs forming clover structures (except trnK, trnH, trnN, trnS1, trnS2, and trnR). Comparative analysis with nine existing Camaenidae mitogenomes revealed: (1) The nucleotide composition of mitochondrial genes was significantly skewed toward A and T; (2) Most protein genes used ATN start codons and TAA/T- stop codons; (3) Synonymous codons ending with T/A were dominant. Analyses (PR2-plot, neutrality plot) indicated codon usage was influenced by both mutation pressure and natural selection. Phylogenetically, the three newly sequenced species clustered within Bradybaeninae of Camaenidae, consistent with previous classifications. The results support Hygromiidae and Geomitridae as sister groups and identify Polygyridae as the sister clade to Camaenidae. Additionally, they also partially support elevating Satsuma and its subgenus to subfamily status. This study enriches mitogenomic resources for Camaenidae and provides foundational data for future research on codon usage, adaptive evolution, and phylogenetics within this family.</p>\",\"PeriodicalId\":11467,\"journal\":{\"name\":\"Ecology and Evolution\",\"volume\":\"15 10\",\"pages\":\"\"},\"PeriodicalIF\":2.3000,\"publicationDate\":\"2025-10-12\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12515985/pdf/\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Ecology and Evolution\",\"FirstCategoryId\":\"99\",\"ListUrlMain\":\"https://onlinelibrary.wiley.com/doi/10.1002/ece3.72282\",\"RegionNum\":2,\"RegionCategory\":\"生物学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q2\",\"JCRName\":\"ECOLOGY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Ecology and Evolution","FirstCategoryId":"99","ListUrlMain":"https://onlinelibrary.wiley.com/doi/10.1002/ece3.72282","RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"ECOLOGY","Score":null,"Total":0}
Mitochondrial Genomes of Three Species of the Family Camaenidae (Gastropoda: Stylommatophora): Structural Features, Codon Usage Patterns, and Phylogenetic Implications
This study sequenced the complete mitochondrial genomes of three Camaenidae snail species (Acusta ravida, Bradybaena similaris, and Trichobradybaena submissa). Each mitogenome contained the typical 37 genes (13 PCGs, 22 tRNAs, and 2 rRNAs), with most tRNAs forming clover structures (except trnK, trnH, trnN, trnS1, trnS2, and trnR). Comparative analysis with nine existing Camaenidae mitogenomes revealed: (1) The nucleotide composition of mitochondrial genes was significantly skewed toward A and T; (2) Most protein genes used ATN start codons and TAA/T- stop codons; (3) Synonymous codons ending with T/A were dominant. Analyses (PR2-plot, neutrality plot) indicated codon usage was influenced by both mutation pressure and natural selection. Phylogenetically, the three newly sequenced species clustered within Bradybaeninae of Camaenidae, consistent with previous classifications. The results support Hygromiidae and Geomitridae as sister groups and identify Polygyridae as the sister clade to Camaenidae. Additionally, they also partially support elevating Satsuma and its subgenus to subfamily status. This study enriches mitogenomic resources for Camaenidae and provides foundational data for future research on codon usage, adaptive evolution, and phylogenetics within this family.
期刊介绍:
Ecology and Evolution is the peer reviewed journal for rapid dissemination of research in all areas of ecology, evolution and conservation science. The journal gives priority to quality research reports, theoretical or empirical, that develop our understanding of organisms and their diversity, interactions between them, and the natural environment.
Ecology and Evolution gives prompt and equal consideration to papers reporting theoretical, experimental, applied and descriptive work in terrestrial and aquatic environments. The journal will consider submissions across taxa in areas including but not limited to micro and macro ecological and evolutionary processes, characteristics of and interactions between individuals, populations, communities and the environment, physiological responses to environmental change, population genetics and phylogenetics, relatedness and kin selection, life histories, systematics and taxonomy, conservation genetics, extinction, speciation, adaption, behaviour, biodiversity, species abundance, macroecology, population and ecosystem dynamics, and conservation policy.