KRT6A作为预后和免疫生物标志物的综合泛癌分析。

IF 3.9 2区 综合性期刊 Q1 MULTIDISCIPLINARY SCIENCES
Yan Lv, Xinji Liu, Zhihan Xiao, Xu Zhan, Wei Tang, Qihang Sun, Qi Wang, Ruijie Zhang, Wei Ping, Ni Zhang
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引用次数: 0

摘要

角蛋白6a (Keratin 6a, KRT6A)是角蛋白家族的一员,可以参与一些肿瘤的发生和发展。然而,目前仍缺乏KRT6A在人类中的泛癌分析。我们借助多种外部公共数据库(主要包括TCGA、GTEx、HPA、TIMER2.0、UALCAN、TISIDB、GEPIA2、Kaplan-Meier Plotter、cbiopportal、TISCH2等)研究了KRT6A的泛癌作用。我们采用免疫组化方法检测KRT6A蛋白在肺腺癌(LUAD)及其邻近正常组织中的表达。结果显示,KRT6A mRNA和蛋白在大多数肿瘤中存在差异表达,其表达和功能可能受DNA甲基化、RNA甲基化和蛋白磷酸化的调控,并与不同肿瘤患者的预后和临床亚型相关。KRT6A在不同的癌症中具有多种遗传和表观遗传特征,其遗传变异的主要类型为突变。同时,KRT6A与不同人类肿瘤的肿瘤突变负荷(tumor mutation burden, TMB)、微卫星不稳定性(microsatellite instability, MSI)、肿瘤干性评分(tumor stemness score, TSC)、免疫检查点、免疫调节基因、肿瘤免疫微环境(tumor immune microenvironment, time)密切相关。其次,KRT6A的表达水平与免疫治疗和药物敏感性相关。此外,生物信息学分析和免疫组织化学实验证实KRT6A mRNA和蛋白在LUAD中表达上调,并可通过促进表皮发育、中间丝细胞骨架和角化包膜等过程促进LUAD的发展过程。这是首次对KRT6A进行泛癌分析,为其在各种人类肿瘤中的作用提供了全面、系统的认识,也揭示了KRT6A有望成为潜在的预后生物标志物和癌症免疫治疗的新靶点。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Comprehensive pan-cancer analysis of KRT6A as a prognostic and immune biomarker.

Keratin 6 A (KRT6A) is a member of the keratin family and can participate in the occurrence and development of some tumors. However, there is still a lack of pan-cancer analysis of KRT6A in humans. We studied the pan-cancer role of KRT6A with the help of a variety of external public databases (mainly including TCGA, GTEx, HPA, TIMER2.0, UALCAN, TISIDB, GEPIA2, Kaplan-Meier Plotter, cBioPortal and TISCH2, etc.). We performed immunohistochemistry detection of KRT6A protein expression in lung adenocarcinoma (LUAD) and its adjacent normal tissues. The results showed that KRT6A mRNA and protein were differentially expressed in most tumors, and its expression and function may be regulated by DNA methylation, RNA methylation and protein phosphorylation, and were related to the prognosis and clinical subtypes of patients with different tumors. KRT6A has multiple genetic and epigenetic characteristics in different cancers, and the main type of its genetic variation is mutation. At the same time, KRT6A is closely related to tumor mutation burden (TMB), microsatellite instability (MSI), tumor stemness score (TSC), immune checkpoints, immunomodulatory genes, and tumor immune microenvironment (TIME) in different human tumors. Secondly, the expression level of KRT6A is associated with immunotherapy and drug sensitivity. In addition, bioinformatics analysis and immunohistochemistry experiments verified that KRT6A mRNA and protein were up-regulated in LUAD, and could promote the development process of LUAD by promoting processes such as epidermis development, intermediate filament cytoskeleton and cornified envelope. This is the first pan-cancer analysis of KRT6A, which provides a comprehensive and systematic understanding of its role in various human tumors, and also reveals that KRT6A is expected to become a potential prognostic biomarker and a new target for cancer immunotherapy.

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来源期刊
Scientific Reports
Scientific Reports Natural Science Disciplines-
CiteScore
7.50
自引率
4.30%
发文量
19567
审稿时长
3.9 months
期刊介绍: We publish original research from all areas of the natural sciences, psychology, medicine and engineering. You can learn more about what we publish by browsing our specific scientific subject areas below or explore Scientific Reports by browsing all articles and collections. Scientific Reports has a 2-year impact factor: 4.380 (2021), and is the 6th most-cited journal in the world, with more than 540,000 citations in 2020 (Clarivate Analytics, 2021). •Engineering Engineering covers all aspects of engineering, technology, and applied science. It plays a crucial role in the development of technologies to address some of the world''s biggest challenges, helping to save lives and improve the way we live. •Physical sciences Physical sciences are those academic disciplines that aim to uncover the underlying laws of nature — often written in the language of mathematics. It is a collective term for areas of study including astronomy, chemistry, materials science and physics. •Earth and environmental sciences Earth and environmental sciences cover all aspects of Earth and planetary science and broadly encompass solid Earth processes, surface and atmospheric dynamics, Earth system history, climate and climate change, marine and freshwater systems, and ecology. It also considers the interactions between humans and these systems. •Biological sciences Biological sciences encompass all the divisions of natural sciences examining various aspects of vital processes. The concept includes anatomy, physiology, cell biology, biochemistry and biophysics, and covers all organisms from microorganisms, animals to plants. •Health sciences The health sciences study health, disease and healthcare. This field of study aims to develop knowledge, interventions and technology for use in healthcare to improve the treatment of patients.
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