Asha J. Dissanayake, Qiu-Ju Shang, Mei-Feng Chi, Kevin D. Hyde, Jian-Kui Liu
{"title":"藓科植物的分类与系统发育","authors":"Asha J. Dissanayake, Qiu-Ju Shang, Mei-Feng Chi, Kevin D. Hyde, Jian-Kui Liu","doi":"10.1007/s13225-025-00563-0","DOIUrl":null,"url":null,"abstract":"<p>Diatrypaceae is among the most species-rich families within Xylariales, exhibiting a global distribution, a broad host range, and diverse ecological lifestyles. However, its taxonomy remains problematic due to overlapping morphological traits, insufficient diagnostic features in historical classifications, and the frequent absence of type specimens and corresponding multi-locus sequence data in GenBank. These limitations have resulted in poorly resolved generic boundaries and hinder accurate identification and natural classification within the family. In this study, we undertook an integrative taxonomic revision of Diatrypaceae by examining 17 herbarium specimens loaned from major international collections (B, BPI, BRIP, E, G, K, NY, PC, PDD, S), supplemented by redrawn illustrations from original descriptions where type material was unavailable. Additionally, approximately 150 fresh collections from China, Italy, and Thailand were investigated through single spore isolation and morphological examination. Molecular data were generated for multi-gene phylogenetic analysis based on combined ITS, <i>tub2</i>, LSU, and <i>rpb2</i> sequences. Phylogenetic reconstruction using Maximum likelihood and Bayesian inference supports the recognition of 183 species within 34 genera, including the introduction of ten novel genera: <i>Allantoideospora</i>, <i>Alloperoneutypa</i>, <i>Brunneosepta</i>, <i>Fusiformiascus</i>, <i>Guttuliascospora</i>, <i>Imitatirotula</i>, <i>Lineariascus</i>, <i>Retiticulatihypha</i>, <i>Sessiliascus</i>, and <i>Trichromostroma</i>. The study also describes 29 novel species, 23 previously known species, and proposes 56 new combinations, all of which are illustrated and compared with morphological data and phylogenetically related taxa. Until further investigation using molecular data is proven, several morphologically characterized genera (<i>Dothideovalsa</i>, <i>Echinomyces</i>, <i>Endoxylina</i>, <i>Leptoperidia</i>, and <i>Rostronitschkia</i>) were placed within Diatrypaceae. This comprehensive morpho-molecular framework significantly refines the taxonomy of Diatrypaceae and provides a foundation for future systematic and ecological studies in this complex family.</p>","PeriodicalId":12471,"journal":{"name":"Fungal Diversity","volume":"1 1","pages":""},"PeriodicalIF":24.8000,"publicationDate":"2025-10-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Insights into the taxonomy and phylogeny of Diatrypaceae\",\"authors\":\"Asha J. Dissanayake, Qiu-Ju Shang, Mei-Feng Chi, Kevin D. Hyde, Jian-Kui Liu\",\"doi\":\"10.1007/s13225-025-00563-0\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p>Diatrypaceae is among the most species-rich families within Xylariales, exhibiting a global distribution, a broad host range, and diverse ecological lifestyles. However, its taxonomy remains problematic due to overlapping morphological traits, insufficient diagnostic features in historical classifications, and the frequent absence of type specimens and corresponding multi-locus sequence data in GenBank. These limitations have resulted in poorly resolved generic boundaries and hinder accurate identification and natural classification within the family. In this study, we undertook an integrative taxonomic revision of Diatrypaceae by examining 17 herbarium specimens loaned from major international collections (B, BPI, BRIP, E, G, K, NY, PC, PDD, S), supplemented by redrawn illustrations from original descriptions where type material was unavailable. Additionally, approximately 150 fresh collections from China, Italy, and Thailand were investigated through single spore isolation and morphological examination. Molecular data were generated for multi-gene phylogenetic analysis based on combined ITS, <i>tub2</i>, LSU, and <i>rpb2</i> sequences. Phylogenetic reconstruction using Maximum likelihood and Bayesian inference supports the recognition of 183 species within 34 genera, including the introduction of ten novel genera: <i>Allantoideospora</i>, <i>Alloperoneutypa</i>, <i>Brunneosepta</i>, <i>Fusiformiascus</i>, <i>Guttuliascospora</i>, <i>Imitatirotula</i>, <i>Lineariascus</i>, <i>Retiticulatihypha</i>, <i>Sessiliascus</i>, and <i>Trichromostroma</i>. The study also describes 29 novel species, 23 previously known species, and proposes 56 new combinations, all of which are illustrated and compared with morphological data and phylogenetically related taxa. Until further investigation using molecular data is proven, several morphologically characterized genera (<i>Dothideovalsa</i>, <i>Echinomyces</i>, <i>Endoxylina</i>, <i>Leptoperidia</i>, and <i>Rostronitschkia</i>) were placed within Diatrypaceae. This comprehensive morpho-molecular framework significantly refines the taxonomy of Diatrypaceae and provides a foundation for future systematic and ecological studies in this complex family.</p>\",\"PeriodicalId\":12471,\"journal\":{\"name\":\"Fungal Diversity\",\"volume\":\"1 1\",\"pages\":\"\"},\"PeriodicalIF\":24.8000,\"publicationDate\":\"2025-10-13\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Fungal Diversity\",\"FirstCategoryId\":\"99\",\"ListUrlMain\":\"https://doi.org/10.1007/s13225-025-00563-0\",\"RegionNum\":1,\"RegionCategory\":\"生物学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q1\",\"JCRName\":\"MYCOLOGY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Fungal Diversity","FirstCategoryId":"99","ListUrlMain":"https://doi.org/10.1007/s13225-025-00563-0","RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q1","JCRName":"MYCOLOGY","Score":null,"Total":0}
Insights into the taxonomy and phylogeny of Diatrypaceae
Diatrypaceae is among the most species-rich families within Xylariales, exhibiting a global distribution, a broad host range, and diverse ecological lifestyles. However, its taxonomy remains problematic due to overlapping morphological traits, insufficient diagnostic features in historical classifications, and the frequent absence of type specimens and corresponding multi-locus sequence data in GenBank. These limitations have resulted in poorly resolved generic boundaries and hinder accurate identification and natural classification within the family. In this study, we undertook an integrative taxonomic revision of Diatrypaceae by examining 17 herbarium specimens loaned from major international collections (B, BPI, BRIP, E, G, K, NY, PC, PDD, S), supplemented by redrawn illustrations from original descriptions where type material was unavailable. Additionally, approximately 150 fresh collections from China, Italy, and Thailand were investigated through single spore isolation and morphological examination. Molecular data were generated for multi-gene phylogenetic analysis based on combined ITS, tub2, LSU, and rpb2 sequences. Phylogenetic reconstruction using Maximum likelihood and Bayesian inference supports the recognition of 183 species within 34 genera, including the introduction of ten novel genera: Allantoideospora, Alloperoneutypa, Brunneosepta, Fusiformiascus, Guttuliascospora, Imitatirotula, Lineariascus, Retiticulatihypha, Sessiliascus, and Trichromostroma. The study also describes 29 novel species, 23 previously known species, and proposes 56 new combinations, all of which are illustrated and compared with morphological data and phylogenetically related taxa. Until further investigation using molecular data is proven, several morphologically characterized genera (Dothideovalsa, Echinomyces, Endoxylina, Leptoperidia, and Rostronitschkia) were placed within Diatrypaceae. This comprehensive morpho-molecular framework significantly refines the taxonomy of Diatrypaceae and provides a foundation for future systematic and ecological studies in this complex family.
期刊介绍:
Fungal Diversity, the official journal of the Kunming Institute of Botany of the Chinese Academy of Sciences, is an international, peer-reviewed journal covering all aspects of mycology. It prioritizes papers on biodiversity, systematic, and molecular phylogeny. While it welcomes novel research and review articles, authors aiming to publish checklists are advised to seek regional journals, and the introduction of new species and genera should generally be supported by molecular data.
Published articles undergo peer review and are accessible online first with a permanent DOI, making them citable as the official Version of Record according to NISO RP-8-2008 standards. Any necessary corrections after online publication require the publication of an Erratum.