卡西尼椭圆稳健有丝分裂检测细胞成像。

IF 1.9 4区 工程技术 Q3 MICROSCOPY
Reza Yazdi, Hassan Khotanlou
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引用次数: 0

摘要

有丝分裂的准确检测在自动化细胞分析中至关重要,然而许多现有的方法严重依赖于深度学习模型或复杂的检测技术,这可能是计算密集型的,容易出错,特别是在分割不完整的情况下。本研究提出了一种新的无监督有丝分裂检测方法,利用卡西尼椭圆的几何特性来降低计算成本并增强鲁棒性。我们的方法集成了新开发的深度学习模型MaxSigNet,用于初始细胞分割。随后,我们使用卡西尼椭圆在其单环模式下检测初始帧中的母细胞,并在随后的帧中切换到双环模式以识别子细胞并确认有丝分裂事件。该方法的成功取决于母细胞中存在相等的非零焦点值和子细胞中存在不同的非零焦点值,这表明有丝分裂检测准确。该方法在来自4个不同细胞系的6个数据集上进行了评估,在4个数据集上获得了完美的F1、Recall和Precision分数,其余两个数据集的分数分别为96%和85%。对比分析表明,我们的方法在F1和召回指标上优于类似的方法。此外,该方法对不完全分割表现出了很强的鲁棒性,在使用K-means、Felzenszwalb和Watershed等较老的分割方法进行测试时,F1分数平均只下降了20%。该方法利用卡西尼椭圆的特性,在有丝分裂检测方面取得了重大进展,为自动化细胞分析系统提供了可靠和高效的解决方案。这种方法有望提高细胞行为研究的准确性和效率,在各种生物医学研究领域具有潜在的应用前景。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Cassini ovals for robust mitosis detection in cellular imaging.

Accurate detection of mitosis is crucial in automated cell analysis, yet many existing methods depend heavily on deep learning models or complex detection techniques, which can be computationally intensive and error-prone, particularly when segmentation is incomplete. This study presents a novel unsupervised method for mitosis detection, leveraging the geometric properties of the Cassini oval to reduce computational costs and enhance robustness. Our approach integrates a newly developed deep learning model, MaxSigNet, for initial cell segmentation. We subsequently employ the Cassini oval in its single-ring mode to detect mother cells in the initial frame and switch to double-ring mode in subsequent frames to identify daughter cells and confirm mitosis events. The success of this method hinges on the presence of equal non-zero foci values in the mother cell and distinct non-zero foci values in the daughter cells, which indicate accurate mitosis detection. The method was evaluated across six datasets from four different cell lines, achieving perfect F1, Recall and Precision scores on four datasets, with scores of 96% and 85% on the remaining two. Comparative analysis demonstrated that our method outperformed similar approaches in F1 and Recall metrics. Additionally, the method showed substantial robustness to incomplete segmentation, with only a 20% average drop in F1 scores when tested with older segmentation methods like K-means, Felzenszwalb and Watershed. The proposed method offers a significant advancement in mitosis detection by leveraging the Cassini oval's properties, providing a reliable and efficient solution for automated cell analysis systems. This approach promises to enhance the accuracy and efficiency of cellular behaviour studies, with potential applications in various biomedical research fields.

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来源期刊
Journal of microscopy
Journal of microscopy 工程技术-显微镜技术
CiteScore
4.30
自引率
5.00%
发文量
83
审稿时长
1 months
期刊介绍: The Journal of Microscopy is the oldest journal dedicated to the science of microscopy and the only peer-reviewed publication of the Royal Microscopical Society. It publishes papers that report on the very latest developments in microscopy such as advances in microscopy techniques or novel areas of application. The Journal does not seek to publish routine applications of microscopy or specimen preparation even though the submission may otherwise have a high scientific merit. The scope covers research in the physical and biological sciences and covers imaging methods using light, electrons, X-rays and other radiations as well as atomic force and near field techniques. Interdisciplinary research is welcome. Papers pertaining to microscopy are also welcomed on optical theory, spectroscopy, novel specimen preparation and manipulation methods and image recording, processing and analysis including dynamic analysis of living specimens. Publication types include full papers, hot topic fast tracked communications and review articles. Authors considering submitting a review article should contact the editorial office first.
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