Padmanaban M Abirami, K L Milan, M Anuradha, Kunka Mohanram Ramkumar
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Among them, GPX3 emerged as the central biomarker linked to ferroptosis in GDM. We further validated GPX3 expression across various placental cell types using single cell RNA sequencing data. Further CIBERSORT analysis determined a significant association between GPX3 and several immune cell populations, including macrophages, B cells, monocytes, and T cells. Finally, mRNA expression of GPX3 was experimentally validated in placental samples from GDM patients, where it was found to correlate with a reduced sTFR/ferritin ratio, suggesting disrupted iron homeostasis. In conclusion, GPX3 is identified as a crucial immuno-ferroptotic biomarker in GDM, with potential diagnostic value. 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引用次数: 0
摘要
妊娠期糖尿病(GDM)以妊娠期葡萄糖耐受不良为特征,新出现的证据表明铁代谢失调是其发病机制的关键调节因子。铁凋亡是一种铁介导的细胞死亡,最近在GDM中被研究,研究开始揭示铁诱导的氧化应激和胎盘功能障碍之间的联系。在这项研究中,我们使用来自基因表达综合数据库的数据集来识别与GDM相关的铁下垂标记。共鉴定出57个与铁下垂相关的差异表达基因。使用机器学习方法(包括Boruta, Random Forest和LASSO回归)进行特征选择,以确定最关键的基因。其中,GPX3成为GDM中与铁下垂相关的核心生物标志物。我们使用单细胞RNA测序数据进一步验证了GPX3在不同胎盘细胞类型中的表达。进一步的CIBERSORT分析确定GPX3与几种免疫细胞群之间存在显著关联,包括巨噬细胞、B细胞、单核细胞和T细胞。最后,GPX3的mRNA表达在GDM患者的胎盘样本中得到了实验验证,发现GPX3与sTFR/铁蛋白比率降低相关,表明铁稳态被破坏。综上所述,GPX3被认为是GDM中重要的免疫-嗜铁生物标志物,具有潜在的诊断价值。结合生物信息学、机器学习和临床验证,本研究突出了GPX3在免疫浸润和铁代谢交叉中的作用,为未来GDM的诊断和治疗策略提供了新的见解。
Identification of GPX3 as a key biomarker of placental ferroptosis in gestational diabetes mellitus via bioinformatics and clinical analysis.
Gestational diabetes mellitus (GDM) is characterized by glucose intolerance during pregnancy, and emerging evidence implicates dysregulated iron metabolism as a critical modulator of its pathogenesis. Ferroptosis, an iron-mediated cell death, has recently been studied in GDM, with research beginning to unravel the connection between iron-induced oxidative stress and placental dysfunction. In this study, we employed datasets from the Gene Expression Omnibus database to identify markers of ferroptosis that are associated with GDM. A total of 57 differentially expressed genes related to ferroptosis were identified. Feature selection was performed using machine learning approaches, including Boruta, Random Forest, and LASSO regression, to pinpoint the most critical genes. Among them, GPX3 emerged as the central biomarker linked to ferroptosis in GDM. We further validated GPX3 expression across various placental cell types using single cell RNA sequencing data. Further CIBERSORT analysis determined a significant association between GPX3 and several immune cell populations, including macrophages, B cells, monocytes, and T cells. Finally, mRNA expression of GPX3 was experimentally validated in placental samples from GDM patients, where it was found to correlate with a reduced sTFR/ferritin ratio, suggesting disrupted iron homeostasis. In conclusion, GPX3 is identified as a crucial immuno-ferroptotic biomarker in GDM, with potential diagnostic value. Integrating bioinformatics, machine learning, and clinical validation, this study highlights the role of GPX3 at the intersection of immune infiltration and iron metabolism, offering new insights for future diagnostic and therapeutic strategies in GDM.
期刊介绍:
Molecular Diversity is a new publication forum for the rapid publication of refereed papers dedicated to describing the development, application and theory of molecular diversity and combinatorial chemistry in basic and applied research and drug discovery. The journal publishes both short and full papers, perspectives, news and reviews dealing with all aspects of the generation of molecular diversity, application of diversity for screening against alternative targets of all types (biological, biophysical, technological), analysis of results obtained and their application in various scientific disciplines/approaches including:
combinatorial chemistry and parallel synthesis;
small molecule libraries;
microwave synthesis;
flow synthesis;
fluorous synthesis;
diversity oriented synthesis (DOS);
nanoreactors;
click chemistry;
multiplex technologies;
fragment- and ligand-based design;
structure/function/SAR;
computational chemistry and molecular design;
chemoinformatics;
screening techniques and screening interfaces;
analytical and purification methods;
robotics, automation and miniaturization;
targeted libraries;
display libraries;
peptides and peptoids;
proteins;
oligonucleotides;
carbohydrates;
natural diversity;
new methods of library formulation and deconvolution;
directed evolution, origin of life and recombination;
search techniques, landscapes, random chemistry and more;