基于凋亡相关基因的急性心肌梗死特征基因的鉴定与验证。

IF 3.4 3区 医学 Q2 MEDICINE, RESEARCH & EXPERIMENTAL
Yuting Zhou, Yehong Liu, Baida Xu, Tianhui Jin, Ting Ye, Wentao Su, Chengsi Li, Tingting Kang, Haoran Xie, Gangjun Zong
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引用次数: 0

摘要

背景:急性心肌梗死(AMI)是冠状动脉疾病(CAD)最严重的并发症之一,也是全球非传染性疾病死亡的主要原因。近年来,随着对铁下沉研究的深入,这种伴随铁积累和脂质过氧化的细胞死亡模式在心肌梗死中的作用越来越被证实,并最终导致细胞氧化性死亡。但其预后机制及铁下垂在AMI发生中的参与程度仍需进一步探讨。方法:从gene expression Omnibus (GEO)数据集中获取AMI患者和对照组的基因表达数据集(GSE97320、GSE60993)。铁中毒相关差异表达基因(FDEGs)的筛选。此外,通过基因本体(GO)分析和京都基因与基因组百科全书(KEGG)通路分析对这些fdeg的生物学功能进行了分析。使用最小绝对收缩和选择算子(LASSO)和支持向量机递归特征消除(SVM-RFE)进一步检查fdeg以构建预测模型。采用ROC曲线验证模型的准确性。将GSE48060和GSE59867作为验证集,对模型进行验证。最后,采集AMI和对照组的外周血进行qRT-PCR检测fdeg的差异表达情况。结果:CYB5R1、TSC1、LAMP2、PARK7、MGST1是最具特征的fdeg,由它们组成的诊断模型对AMI具有较好的诊断能力。结论:机器学习识别AMI中fdeg是一种可靠的研究方法,可以为AMI中铁下垂的研究提供进一步的思路。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

Identification and validation of feature genes of acute myocardial infarction based on ferroptosis-related genes.

Identification and validation of feature genes of acute myocardial infarction based on ferroptosis-related genes.

Identification and validation of feature genes of acute myocardial infarction based on ferroptosis-related genes.

Identification and validation of feature genes of acute myocardial infarction based on ferroptosis-related genes.

Background: Acute myocardial infarction (AMI) represents one of the most severe complications of coronary artery disease (CAD) and is a leading cause of mortality from noncommunicable diseases globally. In recent years, with the deepening of research on ferroptosis, the role of this cell death mode accompanied by iron accumulation and lipid peroxidation in myocardial infarction has been increasingly confirmed, which eventually leads to cell oxidative death. However, prognosis mechanism, and participation degree of ferroptosis in the occurrence of AMI still need to be further explored.

Methods: The gene expression data sets (GSE97320, GSE60993) of AMI patients and the control group were obtained from the Gene Expression Omnibus (GEO) data sets. Screening for ferroptosis-related differentially expressed genes (FDEGs). In addition, the biological functions of these FDEGs were analyzed by Gene Ontology (GO) analysis and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway analysis. Least absolute shrinkage and selection operator (LASSO) and support vector machine-recursive feature elimination (SVM-RFE) were used to further check FDEGs to construct the prognostication model. ROC curves were used to validate the model's accuracy. GSE48060 and GSE59867 were set as a validation set to verify the model. Finally, the peripheral blood of AMI and control samples was collected for qRT-PCR to examine the differential expression situation of FDEGs.

Results: The CYB5R1, TSC1, LAMP2, PARK7, and MGST1 were identified as the most characteristic FDEGs, and the diagnostic model composed of them has excellent diagnostic ability for AMI.

Conclusions: The identification of FDEGs in AMI by machine learning is a reliable research method that can provide further ideas for the study of ferroptosis in AMI.

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来源期刊
European Journal of Medical Research
European Journal of Medical Research 医学-医学:研究与实验
CiteScore
3.20
自引率
0.00%
发文量
247
审稿时长
>12 weeks
期刊介绍: European Journal of Medical Research publishes translational and clinical research of international interest across all medical disciplines, enabling clinicians and other researchers to learn about developments and innovations within these disciplines and across the boundaries between disciplines. The journal publishes high quality research and reviews and aims to ensure that the results of all well-conducted research are published, regardless of their outcome.
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