Tanja Kunej, Rebeka Podgrajsek, Helena Jaklic, Alenka Hodzic, Martin Stimpfel, Olivera Miljanovic, Momcilo Ristanovic, Ivana Novakovic, Dijana Plaseska-Karanfilska, Predrag Noveski, Sasa Ostojic, Alena Buretic-Tomljanovic, Antun Grskovic, Borut Peterlin
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Using PCR amplification and agarose electrophoresis, we genotyped the <i>ACE</i> gene Alu I/D polymorphism in 745 South Slavic men. The study group consisted of 457 patients with impaired spermatogenesis, 239 with non-obstructive azoospermia (NOA) and 218 with oligoasthenoteratozoospermia (OAT) and a control group of 288 fertile men. No association was found between the Alu I/D polymorphism and these semen phenotypes, suggesting that it is not associated with NOA or severe OAT in this cohort. To provide a broader regulatory context, we also developed an integrative atlas of <i>ACE</i> regulatory elements by in silico multi-omics analysis using genomics databases and bioinformatics tools. Data integration revealed various regulatory mechanisms at multiple omics levels, including genomics, epigenomics, miRNAomics, transcriptomics, proteomics and epiproteomics. These include genomic variants with predicted deleterious effects, a CpG island, microRNAs (miRNAs) and post-translational modifications (PTMs). In addition, protein interaction analysis revealed that ACE is indirectly linked to several proteins previously associated with male infertility and is also targeted by miRNA previously associated with oligozoospermia. This comprehensive, multi-faceted approach, combining genetic association analysis with bioinformatics, provides insights into <i>ACE</i> regulation in its broader molecular context. 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引用次数: 0
摘要
肾素-血管紧张素系统(RAS)的成分在女性和男性生殖道中均有表达,其中血管紧张素I转换酶(ACE)是男性生殖功能的重要成分,动物模型显示。研究最多的ACE多态性是Alu插入-删除(I/D),它被认为对男性生育能力有负面影响。鉴于文献中相互矛盾的证据,我们进行了一项多中心病例对照研究,以调查ACE Alu I/D多态性与精子发生受损之间的关系。采用PCR扩增和琼脂糖电泳对745名南斯拉夫男性的ACE基因Alu I/D多态性进行了分型。研究组包括457例精子发生障碍患者,239例非阻塞性无精子症(NOA)患者和218例少弱无畸形精子症(OAT)患者,以及288例有生育能力的男性。没有发现Alu I/D多态性与这些精液表型之间的关联,这表明它与该队列中NOA或严重OAT无关。为了提供更广泛的调控背景,我们还利用基因组数据库和生物信息学工具通过多组学分析开发了ACE调控元件的集成图谱。数据整合揭示了基因组学、表观基因组学、mirna组学、转录组学、蛋白质组学和表观蛋白质组学等多个组学水平的调控机制。这些包括具有预测有害影响的基因组变异、CpG岛、microrna (mirna)和翻译后修饰(PTMs)。此外,蛋白质相互作用分析显示,ACE与先前与男性不育相关的几种蛋白质间接相关,并且也是先前与少精症相关的miRNA的靶标。这种综合的、多方面的方法,将遗传关联分析与生物信息学相结合,为ACE在更广泛的分子背景下的调控提供了见解。这些结果强调了进一步整合多组学和系统生物学研究的重要性,以更好地了解ACE在男性生殖功能中的作用。
ACE gene and male infertility: a South Slavic case-control study and multi-omics data integration.
Components of the renin-angiotensin system (RAS) are expressed in both female and male reproductive tracts, with angiotensin I converting enzyme (ACE) being an important component for male reproductive function, as shown in animal models. The most studied ACE polymorphism is the Alu insertion-deletion (I/D), which has been proposed to have a negative effect on male fertility. Given the conflicting evidence in the literature, we conducted a multicentric case-control study to investigate the association between the ACE Alu I/D polymorphism and impaired spermatogenesis. Using PCR amplification and agarose electrophoresis, we genotyped the ACE gene Alu I/D polymorphism in 745 South Slavic men. The study group consisted of 457 patients with impaired spermatogenesis, 239 with non-obstructive azoospermia (NOA) and 218 with oligoasthenoteratozoospermia (OAT) and a control group of 288 fertile men. No association was found between the Alu I/D polymorphism and these semen phenotypes, suggesting that it is not associated with NOA or severe OAT in this cohort. To provide a broader regulatory context, we also developed an integrative atlas of ACE regulatory elements by in silico multi-omics analysis using genomics databases and bioinformatics tools. Data integration revealed various regulatory mechanisms at multiple omics levels, including genomics, epigenomics, miRNAomics, transcriptomics, proteomics and epiproteomics. These include genomic variants with predicted deleterious effects, a CpG island, microRNAs (miRNAs) and post-translational modifications (PTMs). In addition, protein interaction analysis revealed that ACE is indirectly linked to several proteins previously associated with male infertility and is also targeted by miRNA previously associated with oligozoospermia. This comprehensive, multi-faceted approach, combining genetic association analysis with bioinformatics, provides insights into ACE regulation in its broader molecular context. These results emphasize the importance of further integrative multi-omics and systems biology research to better understand the role of ACE in male reproductive function.
期刊介绍:
Systems Biology in Reproductive Medicine, SBiRM, publishes Research Articles, Communications, Applications Notes that include protocols a Clinical Corner that includes case reports, Review Articles and Hypotheses and Letters to the Editor on human and animal reproduction. The journal will highlight the use of systems approaches including genomic, cellular, proteomic, metabolomic, bioinformatic, molecular, and biochemical, to address fundamental questions in reproductive biology, reproductive medicine, and translational research. The journal publishes research involving human and animal gametes, stem cells, developmental biology and toxicology, and clinical care in reproductive medicine. Specific areas of interest to the journal include: male factor infertility and germ cell biology, reproductive technologies (gamete micro-manipulation and cryopreservation, in vitro fertilization/embryo transfer (IVF/ET) and contraception. Research that is directed towards developing new or enhanced technologies for clinical medicine or scientific research in reproduction is of significant interest to the journal.