{"title":"MediaAssist:支持细胞培养基设计和优化的数据库。","authors":"Kalyani Thakar,Indrani Madhugiri,Chetan Gadgil,Mugdha Gadgil","doi":"10.1093/nar/gkaf982","DOIUrl":null,"url":null,"abstract":"Animal cell culture is widely used for research in fundamental biology, drug discovery, and the manufacture of biopharmaceutical products such as recombinant proteins, vaccines, and cell therapies. The nutritional medium used to culture animal cells is a complex mixture of >50 components. Historically, it has been supplemented with sera such as fetal bovine serum, but commercial applications now widely use serum-free media. Developing or optimizing a medium formulation requires knowledge of chemical parameters such as solubility and stability and benefits from knowledge of biological parameters such as specific nutrient uptake rates and transporters of the different components. The complexity of medium design and optimization is increased manifold by the possibility of co-dependencies between components, where the effect of one component depends on the concentration of another. To our knowledge, there is no common repository of these chemical and biological parameters, including co-dependencies. The MediaAssist database collates this information to aid in designing and optimizing cell culture medium. Much of this information, such as co-dependencies, is dynamic, and we intend to keep updating the database as new information becomes available. MediaAssist is available at https://mediaassist.ncl.res.in.","PeriodicalId":19471,"journal":{"name":"Nucleic Acids Research","volume":"26 1","pages":""},"PeriodicalIF":13.1000,"publicationDate":"2025-10-08","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"MediaAssist: database to support the design and optimization of cell culture medium.\",\"authors\":\"Kalyani Thakar,Indrani Madhugiri,Chetan Gadgil,Mugdha Gadgil\",\"doi\":\"10.1093/nar/gkaf982\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"Animal cell culture is widely used for research in fundamental biology, drug discovery, and the manufacture of biopharmaceutical products such as recombinant proteins, vaccines, and cell therapies. The nutritional medium used to culture animal cells is a complex mixture of >50 components. Historically, it has been supplemented with sera such as fetal bovine serum, but commercial applications now widely use serum-free media. Developing or optimizing a medium formulation requires knowledge of chemical parameters such as solubility and stability and benefits from knowledge of biological parameters such as specific nutrient uptake rates and transporters of the different components. The complexity of medium design and optimization is increased manifold by the possibility of co-dependencies between components, where the effect of one component depends on the concentration of another. To our knowledge, there is no common repository of these chemical and biological parameters, including co-dependencies. The MediaAssist database collates this information to aid in designing and optimizing cell culture medium. Much of this information, such as co-dependencies, is dynamic, and we intend to keep updating the database as new information becomes available. MediaAssist is available at https://mediaassist.ncl.res.in.\",\"PeriodicalId\":19471,\"journal\":{\"name\":\"Nucleic Acids Research\",\"volume\":\"26 1\",\"pages\":\"\"},\"PeriodicalIF\":13.1000,\"publicationDate\":\"2025-10-08\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Nucleic Acids Research\",\"FirstCategoryId\":\"99\",\"ListUrlMain\":\"https://doi.org/10.1093/nar/gkaf982\",\"RegionNum\":2,\"RegionCategory\":\"生物学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q1\",\"JCRName\":\"BIOCHEMISTRY & MOLECULAR BIOLOGY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Nucleic Acids Research","FirstCategoryId":"99","ListUrlMain":"https://doi.org/10.1093/nar/gkaf982","RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q1","JCRName":"BIOCHEMISTRY & MOLECULAR BIOLOGY","Score":null,"Total":0}
MediaAssist: database to support the design and optimization of cell culture medium.
Animal cell culture is widely used for research in fundamental biology, drug discovery, and the manufacture of biopharmaceutical products such as recombinant proteins, vaccines, and cell therapies. The nutritional medium used to culture animal cells is a complex mixture of >50 components. Historically, it has been supplemented with sera such as fetal bovine serum, but commercial applications now widely use serum-free media. Developing or optimizing a medium formulation requires knowledge of chemical parameters such as solubility and stability and benefits from knowledge of biological parameters such as specific nutrient uptake rates and transporters of the different components. The complexity of medium design and optimization is increased manifold by the possibility of co-dependencies between components, where the effect of one component depends on the concentration of another. To our knowledge, there is no common repository of these chemical and biological parameters, including co-dependencies. The MediaAssist database collates this information to aid in designing and optimizing cell culture medium. Much of this information, such as co-dependencies, is dynamic, and we intend to keep updating the database as new information becomes available. MediaAssist is available at https://mediaassist.ncl.res.in.
期刊介绍:
Nucleic Acids Research (NAR) is a scientific journal that publishes research on various aspects of nucleic acids and proteins involved in nucleic acid metabolism and interactions. It covers areas such as chemistry and synthetic biology, computational biology, gene regulation, chromatin and epigenetics, genome integrity, repair and replication, genomics, molecular biology, nucleic acid enzymes, RNA, and structural biology. The journal also includes a Survey and Summary section for brief reviews. Additionally, each year, the first issue is dedicated to biological databases, and an issue in July focuses on web-based software resources for the biological community. Nucleic Acids Research is indexed by several services including Abstracts on Hygiene and Communicable Diseases, Animal Breeding Abstracts, Agricultural Engineering Abstracts, Agbiotech News and Information, BIOSIS Previews, CAB Abstracts, and EMBASE.