Petra Hruba, Jiri Klema, Eva Girmanova, Petra Mrazova, Lucie Capkova, Katarina Jakubov, Jiri Fronek, Roman Keleman, Ludek Voska, Martina Mackova, Konrad Famulski, Philip F Halloran, Ondrej Viklicky
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Archetypal analysis and linear mixed model were applied to determine molecular phenotypes and their association with posttransplant 1-year eGFR in 234 donor kidneys. Three molecular archetypes were identified. The \"ideal\" archetype (median donor age 42 years, low KDRI, minimal chronic histological changes) was associated with the highest 1-year eGFR, while the \"marginal\" archetype (68 years, extensive chronic changes, high KDRI) with the lowest one. The \"intermediate\" archetype yielded better 1-year eGFR despite donor profiles similar to the marginal group. While KDRI predicted 1-year eGFR, adding molecular archetypes improved model performance (AIC 80.0 vs. 83.7;p<0.05). External validation in an independent dataset (n=174, GSE147451) confirmed predictive value of the model. 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引用次数: 0
摘要
基于供体肾组织的转录组学可能代表预测肾移植结果的新维度。在这项前瞻性的单中心研究中,来自174名脑死亡供者的276个肾脏通过微阵列进行评估,以确定获取活检的表型。采用10倍交叉验证的分子分类器(极端梯度增强、逻辑回归和泊松回归),根据临床变量(年龄、BMI、高血压、ECD肾)和组织学评分(血管纤维内膜增厚、间质纤维化、小管萎缩、小动脉透明质增厚)对供体进行分类。应用原型分析和线性混合模型来确定234个供肾的分子表型及其与移植后1年eGFR的关系。确定了三种分子原型。“理想”原型(中位供者年龄42岁,低KDRI,最小的慢性组织学变化)与最高的1年eGFR相关,而“边缘”原型(68岁,广泛的慢性变化,高KDRI)与最低的1年eGFR相关。“中间”原型产生了更好的1年eGFR,尽管供体特征与边缘组相似。虽然KDRI预测了1年的eGFR,但添加分子原型提高了模型的性能(AIC 80.0 vs. 83.7;p
Archetypal Analysis of Deceased Donor Kidneys: A Molecular Approach for Posttransplant Outcomes.
Donor kidney tissue based transcriptomics may represent new dimension for prediction of kidney transplant outcomes. In this prospective, single-center study, 276 kidneys from 174 deceased brain-death donors were assessed by microarrays to identify phenotypes of procurement biopsies. Molecular classifiers (extreme gradient boosting, logistic and Poisson regression) with 10-fold cross-validation were employed to categorize donors based on clinical variables (age, BMI, hypertension, ECD kidney) and histological scores (vascular fibrous intimal thickening, interstitial fibrosis, tubular atrophy, arteriolar hyaline thickening). Archetypal analysis and linear mixed model were applied to determine molecular phenotypes and their association with posttransplant 1-year eGFR in 234 donor kidneys. Three molecular archetypes were identified. The "ideal" archetype (median donor age 42 years, low KDRI, minimal chronic histological changes) was associated with the highest 1-year eGFR, while the "marginal" archetype (68 years, extensive chronic changes, high KDRI) with the lowest one. The "intermediate" archetype yielded better 1-year eGFR despite donor profiles similar to the marginal group. While KDRI predicted 1-year eGFR, adding molecular archetypes improved model performance (AIC 80.0 vs. 83.7;p<0.05). External validation in an independent dataset (n=174, GSE147451) confirmed predictive value of the model. Molecular profiling of procurement biopsies may help to identify donor kidneys with higher posttransplant eGFR.
期刊介绍:
The American Journal of Transplantation is a leading journal in the field of transplantation. It serves as a forum for debate and reassessment, an agent of change, and a major platform for promoting understanding, improving results, and advancing science. Published monthly, it provides an essential resource for researchers and clinicians worldwide.
The journal publishes original articles, case reports, invited reviews, letters to the editor, critical reviews, news features, consensus documents, and guidelines over 12 issues a year. It covers all major subject areas in transplantation, including thoracic (heart, lung), abdominal (kidney, liver, pancreas, islets), tissue and stem cell transplantation, organ and tissue donation and preservation, tissue injury, repair, inflammation, and aging, histocompatibility, drugs and pharmacology, graft survival, and prevention of graft dysfunction and failure. It also explores ethical and social issues in the field.