全球动物感染SARS-CoV-2风险的预测建模:揭示潜在宿主并告知卫生政策协同作用

IF 3 2区 农林科学 Q2 INFECTIOUS DISEASES
Ruying Fang, Luqi Wang, Xin Yang, Yiyang Guo, Bingjie Peng, Yinsheng Zhang, Dilinuer Kamili, Sirui Li, Yunting Lyv, Sen Li, Shunqing Xu
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引用次数: 0

摘要

动物感染SARS-CoV-2的报告日益引起人们对该病毒潜在天然宿主的担忧。然而,我们对动物感染风险的全球分布和驱动因素的了解仍然有限。为了弥补这一知识差距,我们从各种来源进行了广泛的数据挖掘,并开发了机器学习(ML)模型,以估计全球动物感染SARS-CoV-2的概率。我们训练并评估了三种ML模型,绘制了记录良好的地区的感染风险分布,并预测了感染记录较少的地区的风险。我们的模型确定了欧洲和美国的高风险地区,那里的感染记录分散,以及巴西和亚洲的南部地区,这些地区的感染记录很少。值得注意的是,我们的预测表明,在预测的高风险区域与白尾鹿、美洲水貂和亚洲小爪水獭的已知分布之间存在重叠。研究发现,人为因素比生物物理因素更能预测动物感染,这凸显了可及性、人口密度和COVID-19死亡率的重要性。这些发现表明,公共卫生政策和动物卫生政策之间存在协同增效的潜力。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

Predictive Modeling of Global SARS-CoV-2 Infection Risk in Animals: Unveiling Potential Reservoirs and Informing Health Policy Synergies

Predictive Modeling of Global SARS-CoV-2 Infection Risk in Animals: Unveiling Potential Reservoirs and Informing Health Policy Synergies

Reports of SARS-CoV-2 infections in animals have increasingly raised concerns about potential natural reservoirs for the virus. However, our understanding of the global distribution and drivers of animal infection risk remains limited. To bridge this knowledge gap, we conducted extensive data mining from various sources and developed machine learning (ML) models to estimate the global probability of SARS-CoV-2 infections in animals. We trained and evaluated three ML models, mapping the distribution of infection risk in well-documented regions and projecting risk in areas with sparse infection records. Our models pinpointed high-risk areas in Europe and the United States, where infection records are scattered, as well as in the southern regions of Brazil and Asia, which have sparse infection records. Notably, our projections indicated overlaps between predicted high-risk areas and the known distribution of white-tailed deer, American minks, and Asian small-clawed otters. Anthropogenic factors were found to be more predictive of animal infection than biophysical factors, highlighting the importance of accessibility, population density, and COVID-19 mortality rates. These findings suggest the potential for synergies between public and animal health policies.

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来源期刊
Transboundary and Emerging Diseases
Transboundary and Emerging Diseases 农林科学-传染病学
CiteScore
8.90
自引率
9.30%
发文量
350
审稿时长
1 months
期刊介绍: Transboundary and Emerging Diseases brings together in one place the latest research on infectious diseases considered to hold the greatest economic threat to animals and humans worldwide. The journal provides a venue for global research on their diagnosis, prevention and management, and for papers on public health, pathogenesis, epidemiology, statistical modeling, diagnostics, biosecurity issues, genomics, vaccine development and rapid communication of new outbreaks. Papers should include timely research approaches using state-of-the-art technologies. The editors encourage papers adopting a science-based approach on socio-economic and environmental factors influencing the management of the bio-security threat posed by these diseases, including risk analysis and disease spread modeling. Preference will be given to communications focusing on novel science-based approaches to controlling transboundary and emerging diseases. The following topics are generally considered out-of-scope, but decisions are made on a case-by-case basis (for example, studies on cryptic wildlife populations, and those on potential species extinctions): Pathogen discovery: a common pathogen newly recognised in a specific country, or a new pathogen or genetic sequence for which there is little context about — or insights regarding — its emergence or spread. Prevalence estimation surveys and risk factor studies based on survey (rather than longitudinal) methodology, except when such studies are unique. Surveys of knowledge, attitudes and practices are within scope. Diagnostic test development if not accompanied by robust sensitivity and specificity estimation from field studies. Studies focused only on laboratory methods in which relevance to disease emergence and spread is not obvious or can not be inferred (“pure research” type studies). Narrative literature reviews which do not generate new knowledge. Systematic and scoping reviews, and meta-analyses are within scope.
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