无脊椎动物来源的DNA条形码(iDNA)在西苏门答腊吸血水蛭中的应用:蓝眼窝蛙Leptobrachium waysapuntiense的发现。

IF 2.3 2区 生物学 Q2 ECOLOGY
Ardika Dani Irawan, Katsuyuki Eguchi
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引用次数: 0

摘要

印度尼西亚是世界上生物多样性最丰富的国家之一,拥有各种各样的脊椎动物和植物物种。然而,评估热带雨林的生物多样性仍然具有挑战性。常规工具的使用通常用于监测和研究目的。无脊椎动物来源的DNA (iDNA)是环境DNA (eDNA)的一个分支学科,已成为一种非侵入性的生物多样性评估工具,它补充了传统的生物多样性评估方法。它可以通过分子方法检测脊椎动物物种并监测其种群。利用大量的吸血水蛭为在一个区域内取样更广泛的宿主物种提供了一种有希望的方法,因为这些水蛭在其肠道中长时间保留高质量的宿主DNA。利用Sanger测序技术,对5个引物(16Scp、16Sed、12S、ND2和RepCOI)进行了广泛的分类,成功扩增了272份Haemadipsa样本,鉴定出17种独特的脊椎动物宿主,包括哺乳动物、两栖动物和爬行动物。在我们的16Sed结果中,我们注意到引物集可以捕获比最初目标更广泛的分类群,包括哺乳动物和爬行动物,从而增强了物种丰富度检测。值得注意的是,我们提供了首次基于dna检测的证据,证明了来自苏门答腊岛西部的稀有蓝眼窝蛙,Leptobrachium waysepuntiense。因此,这项研究表明,使用吸血水蛭代表了印度尼西亚生物多样性监测的一种有前途的方法。这种方法提供了一种补充策略,可以与现有做法相结合,加强保护工作。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

Application of Invertebrate-Derived DNA Barcoding (iDNA) in Blood Sucking Leeches From West Sumatra: A Discovery of Blue-Eyed Litter Frog Leptobrachium waysapuntiense

Application of Invertebrate-Derived DNA Barcoding (iDNA) in Blood Sucking Leeches From West Sumatra: A Discovery of Blue-Eyed Litter Frog Leptobrachium waysapuntiense

Indonesia is one of the world's most biodiversity-rich countries, including a wide variety of vertebrate and plant species. However, assessing biodiversity in tropical rainforests remains challenging itself. The use of conventional tools has commonly been employed for monitoring and research purposes. Invertebrate-derived DNA (iDNA), a subdiscipline of environmental DNA (eDNA), has emerged as a noninvasive tool that complements traditional methods for biodiversity assessment. It enables the detection of vertebrate species and the monitoring of their populations through molecular approaches. Utilizing abundant haematophagous leeches provides a promising approach to sample a broader range of host species within an area, as these leeches retain high-quality host DNA in their guts for extended periods. Using Sanger sequencing with five primer sets (16Scp, 16Sed, 12S, ND2, and RepCOI) designed to target broad taxonomic groups, 272 Haemadipsa spp. samples were successfully amplified, resulting in the identification of 17 unique vertebrate hosts, including mammals, amphibians, and reptiles. Within our 16Sed results, we noted that the primer sets could capture a broader range of taxa than originally targeted, encompassing both mammals and reptiles, thereby enhancing species richness detection. Notably, we present evidence of the first iDNA-based detection of the rare blue-eyed litter frog, Leptobrachium waysepuntiense, from western Sumatra. Therefore, this study suggests that the use of haematophagous leeches represents a promising approach for biodiversity monitoring in Indonesia. This method offers a complementary strategy that can be integrated with existing practices to strengthen conservation efforts.

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来源期刊
CiteScore
4.40
自引率
3.80%
发文量
1027
审稿时长
3-6 weeks
期刊介绍: Ecology and Evolution is the peer reviewed journal for rapid dissemination of research in all areas of ecology, evolution and conservation science. The journal gives priority to quality research reports, theoretical or empirical, that develop our understanding of organisms and their diversity, interactions between them, and the natural environment. Ecology and Evolution gives prompt and equal consideration to papers reporting theoretical, experimental, applied and descriptive work in terrestrial and aquatic environments. The journal will consider submissions across taxa in areas including but not limited to micro and macro ecological and evolutionary processes, characteristics of and interactions between individuals, populations, communities and the environment, physiological responses to environmental change, population genetics and phylogenetics, relatedness and kin selection, life histories, systematics and taxonomy, conservation genetics, extinction, speciation, adaption, behaviour, biodiversity, species abundance, macroecology, population and ecosystem dynamics, and conservation policy.
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