{"title":"Kiryu己糖和戊糖基质:己糖和戊糖的外显体、结构和C-1/C-6转化产物的综合模型。","authors":"Takaaki Kiryu, Hiroaki Tatsuoka, Motohiro Shizuma","doi":"10.1016/j.carres.2025.109683","DOIUrl":null,"url":null,"abstract":"<p><p>Various methods have been proposed to memorize the structures of hexoses and pentoses, but none have been widely accepted. Hexoses are classified into four types based on two factors: (1) the combination of hydroxyl group orientations at positions C-2 and C-5, and (2) the symmetry of hydroxyl group orientations from C-2 to C-5. These four types were visualized in a four-part matrix referred to as the \"Kiryu Hexose Matrix.\" This matrix enables the easy and comprehensive identification of the epimeric relationships among aldohexoses and ketohexoses. Furthermore, the matrix can identify hexoses with multiple epimerized hydroxyl groups. This matrix facilitates the derivation of all aldohexose structures based on differences from d- and l-allose, whose C-2 to C-5 hydroxyl groups face right or left, respectively. Ketohexose structures can also be derived. Aldose derivatives with identical functional groups at both ends, such as sugar alcohols, form a synonym pair, which can also be systematically identified using the matrix. Similarly, a corresponding matrix, the \"Kiryu Pentose Matrix,\" can be constructed. By combining Izumoring, a comprehensive diagram of hexose transformations, with the hexose matrix, we were able to incorporate an epimerization-induced model. This model is called the \"Izumori-Kiryu matrix.\" Additionally, we propose a new representation for saccharides using matrices, called the δ/λ-representation. The method easily represents complex saccharide structures with multiple synonyms and comprehensively identifies all synonyms without omission.</p>","PeriodicalId":9415,"journal":{"name":"Carbohydrate Research","volume":"558 ","pages":"109683"},"PeriodicalIF":2.5000,"publicationDate":"2025-09-24","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Kiryu hexose and pentose matrix: A comprehensive model of epimers, structures, and C-1/C-6 inversion products for hexoses and pentoses.\",\"authors\":\"Takaaki Kiryu, Hiroaki Tatsuoka, Motohiro Shizuma\",\"doi\":\"10.1016/j.carres.2025.109683\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><p>Various methods have been proposed to memorize the structures of hexoses and pentoses, but none have been widely accepted. Hexoses are classified into four types based on two factors: (1) the combination of hydroxyl group orientations at positions C-2 and C-5, and (2) the symmetry of hydroxyl group orientations from C-2 to C-5. These four types were visualized in a four-part matrix referred to as the \\\"Kiryu Hexose Matrix.\\\" This matrix enables the easy and comprehensive identification of the epimeric relationships among aldohexoses and ketohexoses. Furthermore, the matrix can identify hexoses with multiple epimerized hydroxyl groups. This matrix facilitates the derivation of all aldohexose structures based on differences from d- and l-allose, whose C-2 to C-5 hydroxyl groups face right or left, respectively. Ketohexose structures can also be derived. Aldose derivatives with identical functional groups at both ends, such as sugar alcohols, form a synonym pair, which can also be systematically identified using the matrix. Similarly, a corresponding matrix, the \\\"Kiryu Pentose Matrix,\\\" can be constructed. By combining Izumoring, a comprehensive diagram of hexose transformations, with the hexose matrix, we were able to incorporate an epimerization-induced model. This model is called the \\\"Izumori-Kiryu matrix.\\\" Additionally, we propose a new representation for saccharides using matrices, called the δ/λ-representation. The method easily represents complex saccharide structures with multiple synonyms and comprehensively identifies all synonyms without omission.</p>\",\"PeriodicalId\":9415,\"journal\":{\"name\":\"Carbohydrate Research\",\"volume\":\"558 \",\"pages\":\"109683\"},\"PeriodicalIF\":2.5000,\"publicationDate\":\"2025-09-24\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Carbohydrate Research\",\"FirstCategoryId\":\"92\",\"ListUrlMain\":\"https://doi.org/10.1016/j.carres.2025.109683\",\"RegionNum\":3,\"RegionCategory\":\"化学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q3\",\"JCRName\":\"BIOCHEMISTRY & MOLECULAR BIOLOGY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Carbohydrate Research","FirstCategoryId":"92","ListUrlMain":"https://doi.org/10.1016/j.carres.2025.109683","RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q3","JCRName":"BIOCHEMISTRY & MOLECULAR BIOLOGY","Score":null,"Total":0}
Kiryu hexose and pentose matrix: A comprehensive model of epimers, structures, and C-1/C-6 inversion products for hexoses and pentoses.
Various methods have been proposed to memorize the structures of hexoses and pentoses, but none have been widely accepted. Hexoses are classified into four types based on two factors: (1) the combination of hydroxyl group orientations at positions C-2 and C-5, and (2) the symmetry of hydroxyl group orientations from C-2 to C-5. These four types were visualized in a four-part matrix referred to as the "Kiryu Hexose Matrix." This matrix enables the easy and comprehensive identification of the epimeric relationships among aldohexoses and ketohexoses. Furthermore, the matrix can identify hexoses with multiple epimerized hydroxyl groups. This matrix facilitates the derivation of all aldohexose structures based on differences from d- and l-allose, whose C-2 to C-5 hydroxyl groups face right or left, respectively. Ketohexose structures can also be derived. Aldose derivatives with identical functional groups at both ends, such as sugar alcohols, form a synonym pair, which can also be systematically identified using the matrix. Similarly, a corresponding matrix, the "Kiryu Pentose Matrix," can be constructed. By combining Izumoring, a comprehensive diagram of hexose transformations, with the hexose matrix, we were able to incorporate an epimerization-induced model. This model is called the "Izumori-Kiryu matrix." Additionally, we propose a new representation for saccharides using matrices, called the δ/λ-representation. The method easily represents complex saccharide structures with multiple synonyms and comprehensively identifies all synonyms without omission.
期刊介绍:
Carbohydrate Research publishes reports of original research in the following areas of carbohydrate science: action of enzymes, analytical chemistry, biochemistry (biosynthesis, degradation, structural and functional biochemistry, conformation, molecular recognition, enzyme mechanisms, carbohydrate-processing enzymes, including glycosidases and glycosyltransferases), chemical synthesis, isolation of natural products, physicochemical studies, reactions and their mechanisms, the study of structures and stereochemistry, and technological aspects.
Papers on polysaccharides should have a "molecular" component; that is a paper on new or modified polysaccharides should include structural information and characterization in addition to the usual studies of rheological properties and the like. A paper on a new, naturally occurring polysaccharide should include structural information, defining monosaccharide components and linkage sequence.
Papers devoted wholly or partly to X-ray crystallographic studies, or to computational aspects (molecular mechanics or molecular orbital calculations, simulations via molecular dynamics), will be considered if they meet certain criteria. For computational papers the requirements are that the methods used be specified in sufficient detail to permit replication of the results, and that the conclusions be shown to have relevance to experimental observations - the authors'' own data or data from the literature. Specific directions for the presentation of X-ray data are given below under Results and "discussion".