Kiryu己糖和戊糖基质:己糖和戊糖的外显体、结构和C-1/C-6转化产物的综合模型。

IF 2.5 3区 化学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY
Takaaki Kiryu, Hiroaki Tatsuoka, Motohiro Shizuma
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引用次数: 0

摘要

人们提出了各种方法来记忆己糖和戊糖的结构,但没有一种方法被广泛接受。根据两个因素将己糖分为四种类型:(1)C-2和C-5位置羟基取向的组合;(2)C-2到C-5羟基取向的对称性。这四种类型在四部分矩阵中被可视化,称为“Kiryu Hexose矩阵”。该矩阵可以方便、全面地鉴定醛己糖和酮己糖之间的外聚关系。此外,该基质可以识别具有多个外映羟基的己糖。该矩阵便于根据d-醛脲和l-醛脲的差异推导出所有醛己糖结构,其C-2到C-5羟基分别朝右或向左。酮己糖结构也可以衍生。醛糖衍生物两端官能团相同,如糖醇,形成同义词对,也可以用矩阵系统地识别。同样,可以构造一个相应的矩阵,即“Kiryu戊糖矩阵”。通过将Izumoring(己糖转化的综合图)与己糖矩阵相结合,我们能够合并一个外聚诱导模型。这个模型被称为“出云- kiryu矩阵”。此外,我们提出了一种新的用矩阵表示糖的方法,称为δ/λ-表示法。该方法可以方便地表示具有多个同义词的复杂糖类结构,并能全面识别所有同义词,不遗漏。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Kiryu hexose and pentose matrix: A comprehensive model of epimers, structures, and C-1/C-6 inversion products for hexoses and pentoses.

Various methods have been proposed to memorize the structures of hexoses and pentoses, but none have been widely accepted. Hexoses are classified into four types based on two factors: (1) the combination of hydroxyl group orientations at positions C-2 and C-5, and (2) the symmetry of hydroxyl group orientations from C-2 to C-5. These four types were visualized in a four-part matrix referred to as the "Kiryu Hexose Matrix." This matrix enables the easy and comprehensive identification of the epimeric relationships among aldohexoses and ketohexoses. Furthermore, the matrix can identify hexoses with multiple epimerized hydroxyl groups. This matrix facilitates the derivation of all aldohexose structures based on differences from d- and l-allose, whose C-2 to C-5 hydroxyl groups face right or left, respectively. Ketohexose structures can also be derived. Aldose derivatives with identical functional groups at both ends, such as sugar alcohols, form a synonym pair, which can also be systematically identified using the matrix. Similarly, a corresponding matrix, the "Kiryu Pentose Matrix," can be constructed. By combining Izumoring, a comprehensive diagram of hexose transformations, with the hexose matrix, we were able to incorporate an epimerization-induced model. This model is called the "Izumori-Kiryu matrix." Additionally, we propose a new representation for saccharides using matrices, called the δ/λ-representation. The method easily represents complex saccharide structures with multiple synonyms and comprehensively identifies all synonyms without omission.

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来源期刊
Carbohydrate Research
Carbohydrate Research 化学-生化与分子生物学
CiteScore
5.00
自引率
3.20%
发文量
183
审稿时长
3.6 weeks
期刊介绍: Carbohydrate Research publishes reports of original research in the following areas of carbohydrate science: action of enzymes, analytical chemistry, biochemistry (biosynthesis, degradation, structural and functional biochemistry, conformation, molecular recognition, enzyme mechanisms, carbohydrate-processing enzymes, including glycosidases and glycosyltransferases), chemical synthesis, isolation of natural products, physicochemical studies, reactions and their mechanisms, the study of structures and stereochemistry, and technological aspects. Papers on polysaccharides should have a "molecular" component; that is a paper on new or modified polysaccharides should include structural information and characterization in addition to the usual studies of rheological properties and the like. A paper on a new, naturally occurring polysaccharide should include structural information, defining monosaccharide components and linkage sequence. Papers devoted wholly or partly to X-ray crystallographic studies, or to computational aspects (molecular mechanics or molecular orbital calculations, simulations via molecular dynamics), will be considered if they meet certain criteria. For computational papers the requirements are that the methods used be specified in sufficient detail to permit replication of the results, and that the conclusions be shown to have relevance to experimental observations - the authors'' own data or data from the literature. Specific directions for the presentation of X-ray data are given below under Results and "discussion".
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