基于序列相似性的1型糖尿病候选基因优先排序的惯性矩张量。

IF 3.1 4区 医学 Q3 IMMUNOLOGY
Eesam Vishnu, Nithya Chandramohan, P Manimaran
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引用次数: 0

摘要

在本文中,研究的重点是1型糖尿病(T1D),这是一种慢性疾病,影响胰腺的胰岛素生成细胞,需要个体依赖外部胰岛素来生存。本文介绍了一种分析蛋白质序列的新方法,将蛋白质序列视为具有质量和转动惯量的刚体来评估序列相似性。该方法利用惯性张量将蛋白质序列转化为矢量,利用欧几里得距离计算相似度。使用这种技术,我们鉴定了24个与T1D相关的基因,显示出与已知的T1D相关基因的显著相似性,并强调了它们在疾病中的潜在重要性。此外,为了更好地了解它们,我们进行了功能富集分析,这有助于研究它们在各种生物过程和分子功能中的作用。基因本体论(GO)分析对于确定已识别基因的优先级并提供其对T1D病理生理的贡献的见解至关重要。结合物理学和计算生物学的概念,我们的研究不仅增加了对T1D疾病的理解,而且为自身免疫性疾病的基因发现和功能分析引入了一种创新的方法。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Sequence similarity-based candidate gene prioritization for Type 1 diabetes mellitus using moment of inertia tensor.

In this paper, the study focuses on Type 1 Diabetes Mellitus (T1D), a chronic condition that affects the insulin-producing cells of the pancreas, requiring individuals to depend on external insulin for survival. We introduce a novel method for analyzing protein sequences by treating them as rigid bodies with mass and moment of inertia to assess sequence similarity. This method transforms the protein sequences into vectors using the moment of inertia tensor, with similarity calculated using Euclidean distance. Using this technique, we identified 24 genes linked to T1D, showing significant similarities to known T1D-related genes and highlighting their potential importance in the disease. Further, we conduct functional enrichment analysis for better understanding, which is very helpful for investigating their roles in various biological processes and molecular functions. The Gene Ontology (GO)analysis is crucial for prioritizing the identified genes and providing insights into their contributions to T1D pathophysiology. To combine the concepts from physics with computational biology, our research not only increases the understanding of T1D disease but also introduces an innovative approach for gene discovery and functional analysis in autoimmune diseases.

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来源期刊
Immunologic Research
Immunologic Research 医学-免疫学
CiteScore
6.90
自引率
0.00%
发文量
83
审稿时长
6-12 weeks
期刊介绍: IMMUNOLOGIC RESEARCH represents a unique medium for the presentation, interpretation, and clarification of complex scientific data. Information is presented in the form of interpretive synthesis reviews, original research articles, symposia, editorials, and theoretical essays. The scope of coverage extends to cellular immunology, immunogenetics, molecular and structural immunology, immunoregulation and autoimmunity, immunopathology, tumor immunology, host defense and microbial immunity, including viral immunology, immunohematology, mucosal immunity, complement, transplantation immunology, clinical immunology, neuroimmunology, immunoendocrinology, immunotoxicology, translational immunology, and history of immunology.
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