{"title":"植物激素和线虫胁迫下大豆七螺旋跨膜蛋白基因的生物信息学鉴定及表达谱分析。","authors":"Wenshu Kang, Nawei Qi, Piao Lei","doi":"10.3390/biology14091223","DOIUrl":null,"url":null,"abstract":"<p><p>Heptahelical transmembrane proteins (HHPs) have recently been recognized as crucial regulators of diverse biological processes in eukaryotes. In this study, 10 <i>GmHHP</i> genes were identified in soybean, and a comprehensive analysis was conducted to examine their phylogenetic relationships, cis-regulatory elements, expression patterns, and potential regulatory networks. Expression profiling revealed that most <i>GmHHP</i> genes were transcriptionally induced by abscisic acid (ABA) and methyl jasmonate (MeJA), with <i>GmHHP1</i> and <i>GmHHP7</i> exhibiting the strongest induction. During soybean cyst nematode (SCN) infection, several <i>GmHHP</i> genes were down-regulated, suggesting a potential role in plant-nematode interactions. Protein interaction network analysis indicated that <i>GmHHPs</i> could interact with mitochondrial pyruvate carriers, alkaline phytoceramidases, and histone deacetylases, which may link them to ABA-regulated biological processes such as stomatal movement, water homeostasis, and stress adaptation. Furthermore, interacting miRNA prediction demonstrated that conserved miRNAs, including miR172 and miR319, might co-regulate <i>GmHHP</i> genes and their associated protein partners. Collectively, these findings indicate that <i>GmHHP</i> genes function as membrane-associated regulators of ABA signaling and defense responses, particularly under biotic stress, such as nematode infection.</p>","PeriodicalId":48624,"journal":{"name":"Biology-Basel","volume":"14 9","pages":""},"PeriodicalIF":3.5000,"publicationDate":"2025-09-09","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12467815/pdf/","citationCount":"0","resultStr":"{\"title\":\"Bioinformatic Identification and Expression Profiling of Heptahelical Transmembrane Protein Genes in Soybean Under Phytohormone and Nematode Stress.\",\"authors\":\"Wenshu Kang, Nawei Qi, Piao Lei\",\"doi\":\"10.3390/biology14091223\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><p>Heptahelical transmembrane proteins (HHPs) have recently been recognized as crucial regulators of diverse biological processes in eukaryotes. In this study, 10 <i>GmHHP</i> genes were identified in soybean, and a comprehensive analysis was conducted to examine their phylogenetic relationships, cis-regulatory elements, expression patterns, and potential regulatory networks. Expression profiling revealed that most <i>GmHHP</i> genes were transcriptionally induced by abscisic acid (ABA) and methyl jasmonate (MeJA), with <i>GmHHP1</i> and <i>GmHHP7</i> exhibiting the strongest induction. During soybean cyst nematode (SCN) infection, several <i>GmHHP</i> genes were down-regulated, suggesting a potential role in plant-nematode interactions. Protein interaction network analysis indicated that <i>GmHHPs</i> could interact with mitochondrial pyruvate carriers, alkaline phytoceramidases, and histone deacetylases, which may link them to ABA-regulated biological processes such as stomatal movement, water homeostasis, and stress adaptation. Furthermore, interacting miRNA prediction demonstrated that conserved miRNAs, including miR172 and miR319, might co-regulate <i>GmHHP</i> genes and their associated protein partners. Collectively, these findings indicate that <i>GmHHP</i> genes function as membrane-associated regulators of ABA signaling and defense responses, particularly under biotic stress, such as nematode infection.</p>\",\"PeriodicalId\":48624,\"journal\":{\"name\":\"Biology-Basel\",\"volume\":\"14 9\",\"pages\":\"\"},\"PeriodicalIF\":3.5000,\"publicationDate\":\"2025-09-09\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12467815/pdf/\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Biology-Basel\",\"FirstCategoryId\":\"99\",\"ListUrlMain\":\"https://doi.org/10.3390/biology14091223\",\"RegionNum\":3,\"RegionCategory\":\"生物学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q1\",\"JCRName\":\"BIOLOGY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Biology-Basel","FirstCategoryId":"99","ListUrlMain":"https://doi.org/10.3390/biology14091223","RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q1","JCRName":"BIOLOGY","Score":null,"Total":0}
Bioinformatic Identification and Expression Profiling of Heptahelical Transmembrane Protein Genes in Soybean Under Phytohormone and Nematode Stress.
Heptahelical transmembrane proteins (HHPs) have recently been recognized as crucial regulators of diverse biological processes in eukaryotes. In this study, 10 GmHHP genes were identified in soybean, and a comprehensive analysis was conducted to examine their phylogenetic relationships, cis-regulatory elements, expression patterns, and potential regulatory networks. Expression profiling revealed that most GmHHP genes were transcriptionally induced by abscisic acid (ABA) and methyl jasmonate (MeJA), with GmHHP1 and GmHHP7 exhibiting the strongest induction. During soybean cyst nematode (SCN) infection, several GmHHP genes were down-regulated, suggesting a potential role in plant-nematode interactions. Protein interaction network analysis indicated that GmHHPs could interact with mitochondrial pyruvate carriers, alkaline phytoceramidases, and histone deacetylases, which may link them to ABA-regulated biological processes such as stomatal movement, water homeostasis, and stress adaptation. Furthermore, interacting miRNA prediction demonstrated that conserved miRNAs, including miR172 and miR319, might co-regulate GmHHP genes and their associated protein partners. Collectively, these findings indicate that GmHHP genes function as membrane-associated regulators of ABA signaling and defense responses, particularly under biotic stress, such as nematode infection.
期刊介绍:
Biology (ISSN 2079-7737) is an international, peer-reviewed, quick-refereeing open access journal of Biological Science published by MDPI online. It publishes reviews, research papers and communications in all areas of biology and at the interface of related disciplines. Our aim is to encourage scientists to publish their experimental and theoretical results in as much detail as possible. There is no restriction on the length of the papers. The full experimental details must be provided so that the results can be reproduced. Electronic files regarding the full details of the experimental procedure, if unable to be published in a normal way, can be deposited as supplementary material.