基于剩余注意模块的ARU-Net自动脑肿瘤MRI分割。

IF 3.3 3区 医学 Q1 MEDICINE, GENERAL & INTERNAL
Erdal Özbay, Feyza Altunbey Özbay
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引用次数: 0

摘要

背景/目的:由于脑肿瘤危及生命,在磁共振成像(MRI)扫描中准确分割脑肿瘤对诊断和治疗计划至关重要。本研究旨在开发一种鲁棒和自动化的方法,能够精确地描绘异质肿瘤区域,同时提高分割精度和泛化。方法:我们提出了一种新的深度学习(DL)架构,它集成了残差连接、自适应通道注意(ACA)和维空间三重注意(DTA)模块。编码模块通过对底层卷积块和残差块应用ACA,有效提取和细化相关特征信息。DTA固定在解码模块的上层,解耦信道权值,更好地提取和融合多尺度特征,提高了性能和效率。输入MRI图像使用对比度有限自适应直方图均衡化(CLAHE)进行对比度增强,去噪滤波器和线性Kuwahara滤波以保留边缘,同时平滑均匀区域。在BTMRII数据集上使用Adam优化器使用分类交叉熵损失对网络进行训练,并与基线U-Net、DenseNet121和Xception模型进行比较实验。性能评估使用准确性、精密度、召回率、f1分数、骰子相似系数(DSC)和交集超过联盟(IoU)指标。结果:在添加剩余连接和ACA模块后,基线U-Net显示出显著的性能提升,DSC提高了约3.3%,精度提高了3.2%,IoU提高了7.7%,f1得分提高了3.3%。ARU-Net进一步提高了分割性能,达到了98.3%的准确率,98.1%的DSC, 96.3%的IoU和出色的f1评分,比U-Net +残差+ ACA变体提高了1.1-2.0%。在所有六种肿瘤类别中,可视化证实了更平滑的边界和更精确的肿瘤轮廓,突出了ARU-Net比基线U-Net和其他传统DL模型更有效地捕获异质肿瘤结构和精细结构细节的能力。结论:ARU-Net结合有效的预处理策略,为脑肿瘤自动分割提供了高度可靠和精确的解决方案。它在U-Net和其他传统模型的多个评估指标上的改进突出了其临床应用的潜力,并为医学图像分析研究提供了新的见解。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Automated Brain Tumor MRI Segmentation Using ARU-Net with Residual-Attention Modules.

Background/Objectives: Accurate segmentation of brain tumors in Magnetic Resonance Imaging (MRI) scans is critical for diagnosis and treatment planning due to their life-threatening nature. This study aims to develop a robust and automated method capable of precisely delineating heterogeneous tumor regions while improving segmentation accuracy and generalization. Methods: We propose Attention Res-UNet (ARU-Net), a novel Deep Learning (DL) architecture integrating residual connections, Adaptive Channel Attention (ACA), and Dimensional-space Triplet Attention (DTA) modules. The encoding module efficiently extracts and refines relevant feature information by applying ACA to the lower layers of convolutional and residual blocks. The DTA is fixed to the upper layers of the decoding module, decoupling channel weights to better extract and fuse multi-scale features, enhancing both performance and efficiency. Input MRI images are pre-processed using Contrast Limited Adaptive Histogram Equalization (CLAHE) for contrast enhancement, denoising filters, and Linear Kuwahara filtering to preserve edges while smoothing homogeneous regions. The network is trained using categorical cross-entropy loss with the Adam optimizer on the BTMRII dataset, and comparative experiments are conducted against baseline U-Net, DenseNet121, and Xception models. Performance is evaluated using accuracy, precision, recall, F1-score, Dice Similarity Coefficient (DSC), and Intersection over Union (IoU) metrics. Results: Baseline U-Net showed significant performance gains after adding residual connections and ACA modules, with DSC improving by approximately 3.3%, accuracy by 3.2%, IoU by 7.7%, and F1-score by 3.3%. ARU-Net further enhanced segmentation performance, achieving 98.3% accuracy, 98.1% DSC, 96.3% IoU, and a superior F1-score, representing additional improvements of 1.1-2.0% over the U-Net + Residual + ACA variant. Visualizations confirmed smoother boundaries and more precise tumor contours across all six tumor classes, highlighting ARU-Net's ability to capture heterogeneous tumor structures and fine structural details more effectively than both baseline U-Net and other conventional DL models. Conclusions: ARU-Net, combined with an effective pre-processing strategy, provides a highly reliable and precise solution for automated brain tumor segmentation. Its improvements across multiple evaluation metrics over U-Net and other conventional models highlight its potential for clinical application and contribute novel insights to medical image analysis research.

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来源期刊
Diagnostics
Diagnostics Biochemistry, Genetics and Molecular Biology-Clinical Biochemistry
CiteScore
4.70
自引率
8.30%
发文量
2699
审稿时长
19.64 days
期刊介绍: Diagnostics (ISSN 2075-4418) is an international scholarly open access journal on medical diagnostics. It publishes original research articles, reviews, communications and short notes on the research and development of medical diagnostics. There is no restriction on the length of the papers. Our aim is to encourage scientists to publish their experimental and theoretical research in as much detail as possible. Full experimental and/or methodological details must be provided for research articles.
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