Demin Li, Ge Zhang, Pengchong Du, Chang Cao, Xuyu He, Yan Lv, Peiyu Yuan, Yujia Wang, Ruhao Wu, Yifan Cao, Yu Yang, Jiamin Gao, Bo Lan, Guo-Ping Shi, Xiaolin Cui, Jinying Zhang, Junnan Tang
{"title":"机器学习结合组学方法揭示腹主动脉瘤中t淋巴细胞命运失衡。","authors":"Demin Li, Ge Zhang, Pengchong Du, Chang Cao, Xuyu He, Yan Lv, Peiyu Yuan, Yujia Wang, Ruhao Wu, Yifan Cao, Yu Yang, Jiamin Gao, Bo Lan, Guo-Ping Shi, Xiaolin Cui, Jinying Zhang, Junnan Tang","doi":"10.1186/s12915-025-02400-x","DOIUrl":null,"url":null,"abstract":"<p><strong>Background: </strong>Abdominal aortic aneurysm (AAA) is typically an asymptomatic disease closely associated with immune mechanisms. A deep understanding of cellular responses within AAA tissues, particularly the molecular changes in T-cell populations, is critical for disease diagnosis and treatment. However, the specific mechanisms inducing T-lymphocyte fate imbalance in AAA remain to be elucidated.</p><p><strong>Results: </strong>The analysis revealed the core mechanisms driving T-lymphocyte fate imbalance in AAA. We successfully established a comprehensive regulatory map encompassing T-cell infiltration regulatory features, critical transcription factors, and dysregulated immune signaling pathways. Machine learning algorithms identified transcription factors FOSB and JUNB as key biomarkers. Validation across multiple independent datasets and clinical samples confirmed the feasibility and accuracy of FOSB and JUNB as clinical diagnostic biomarkers for AAA.</p><p><strong>Conclusions: </strong>Through the analysis of single-cell and bulk data, hallmarks of human AAA cellular landscape and T-cell comprehensive developmental relationships were recapitulated. This study identified important roles of T-cell and the molecular mechanisms for the dynamic T-cell infiltrating process, which could characterize disease status and landscape of human AAA microenvironment. Using the deep learning algorithms, FOSB and JUNB were demonstrated as pivotal biomarkers of AAA, together with screening the potential pharmacologic agents targeting T-cell polarization. Taken together, this expands the current understanding of AAA pathogenesis and may provide a feasible immune-targeted therapeutic strategy.</p>","PeriodicalId":9339,"journal":{"name":"BMC Biology","volume":"23 1","pages":"280"},"PeriodicalIF":4.5000,"publicationDate":"2025-09-26","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12465141/pdf/","citationCount":"0","resultStr":"{\"title\":\"Machine learning combined with omics-based approaches reveals T-lymphocyte cellular fate imbalance in abdominal aortic aneurysm.\",\"authors\":\"Demin Li, Ge Zhang, Pengchong Du, Chang Cao, Xuyu He, Yan Lv, Peiyu Yuan, Yujia Wang, Ruhao Wu, Yifan Cao, Yu Yang, Jiamin Gao, Bo Lan, Guo-Ping Shi, Xiaolin Cui, Jinying Zhang, Junnan Tang\",\"doi\":\"10.1186/s12915-025-02400-x\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><strong>Background: </strong>Abdominal aortic aneurysm (AAA) is typically an asymptomatic disease closely associated with immune mechanisms. A deep understanding of cellular responses within AAA tissues, particularly the molecular changes in T-cell populations, is critical for disease diagnosis and treatment. However, the specific mechanisms inducing T-lymphocyte fate imbalance in AAA remain to be elucidated.</p><p><strong>Results: </strong>The analysis revealed the core mechanisms driving T-lymphocyte fate imbalance in AAA. We successfully established a comprehensive regulatory map encompassing T-cell infiltration regulatory features, critical transcription factors, and dysregulated immune signaling pathways. Machine learning algorithms identified transcription factors FOSB and JUNB as key biomarkers. Validation across multiple independent datasets and clinical samples confirmed the feasibility and accuracy of FOSB and JUNB as clinical diagnostic biomarkers for AAA.</p><p><strong>Conclusions: </strong>Through the analysis of single-cell and bulk data, hallmarks of human AAA cellular landscape and T-cell comprehensive developmental relationships were recapitulated. This study identified important roles of T-cell and the molecular mechanisms for the dynamic T-cell infiltrating process, which could characterize disease status and landscape of human AAA microenvironment. Using the deep learning algorithms, FOSB and JUNB were demonstrated as pivotal biomarkers of AAA, together with screening the potential pharmacologic agents targeting T-cell polarization. Taken together, this expands the current understanding of AAA pathogenesis and may provide a feasible immune-targeted therapeutic strategy.</p>\",\"PeriodicalId\":9339,\"journal\":{\"name\":\"BMC Biology\",\"volume\":\"23 1\",\"pages\":\"280\"},\"PeriodicalIF\":4.5000,\"publicationDate\":\"2025-09-26\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12465141/pdf/\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"BMC Biology\",\"FirstCategoryId\":\"99\",\"ListUrlMain\":\"https://doi.org/10.1186/s12915-025-02400-x\",\"RegionNum\":1,\"RegionCategory\":\"生物学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q1\",\"JCRName\":\"BIOLOGY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"BMC Biology","FirstCategoryId":"99","ListUrlMain":"https://doi.org/10.1186/s12915-025-02400-x","RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q1","JCRName":"BIOLOGY","Score":null,"Total":0}
Machine learning combined with omics-based approaches reveals T-lymphocyte cellular fate imbalance in abdominal aortic aneurysm.
Background: Abdominal aortic aneurysm (AAA) is typically an asymptomatic disease closely associated with immune mechanisms. A deep understanding of cellular responses within AAA tissues, particularly the molecular changes in T-cell populations, is critical for disease diagnosis and treatment. However, the specific mechanisms inducing T-lymphocyte fate imbalance in AAA remain to be elucidated.
Results: The analysis revealed the core mechanisms driving T-lymphocyte fate imbalance in AAA. We successfully established a comprehensive regulatory map encompassing T-cell infiltration regulatory features, critical transcription factors, and dysregulated immune signaling pathways. Machine learning algorithms identified transcription factors FOSB and JUNB as key biomarkers. Validation across multiple independent datasets and clinical samples confirmed the feasibility and accuracy of FOSB and JUNB as clinical diagnostic biomarkers for AAA.
Conclusions: Through the analysis of single-cell and bulk data, hallmarks of human AAA cellular landscape and T-cell comprehensive developmental relationships were recapitulated. This study identified important roles of T-cell and the molecular mechanisms for the dynamic T-cell infiltrating process, which could characterize disease status and landscape of human AAA microenvironment. Using the deep learning algorithms, FOSB and JUNB were demonstrated as pivotal biomarkers of AAA, together with screening the potential pharmacologic agents targeting T-cell polarization. Taken together, this expands the current understanding of AAA pathogenesis and may provide a feasible immune-targeted therapeutic strategy.
期刊介绍:
BMC Biology is a broad scope journal covering all areas of biology. Our content includes research articles, new methods and tools. BMC Biology also publishes reviews, Q&A, and commentaries.