利用光适应视网膜电图进行自闭症谱系障碍的时间序列分类。

IF 3.7 3区 医学 Q2 ENGINEERING, BIOMEDICAL
Sergey Chistiakov, Anton Dolganov, Paul A Constable, Aleksei Zhdanov, Mikhail Kulyabin, Dorothy A Thompson, Irene O Lee, Faisal Albasu, Vasilii Borisov, Mikhail Ronkin
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引用次数: 0

摘要

临床视网膜电图(ERG)是一种非侵入性诊断测试,通过记录短暂闪光后生物电电位的变化来评估视网膜的功能状态。记录的ERG波形为诊断视网膜营养不良和神经系统疾病(如自闭症谱系障碍(ASD)、注意缺陷多动障碍(ADHD)和帕金森病)提供了方法。在本研究中,使用不同的基于时间序列的机器学习方法对来自ASD和正常发育个体的ERG信号进行分类,目的是解释模型做出的决策,以理解模型做出的分类过程。在时间序列分类(TSC)算法中,随机卷积核变换(Random Convolutional Kernel Transform, ROCKET)算法的预测精度最高,预测误差最少。对于模型预测的解释分析,将SHapley加性解释(SHAP)算法应用于每个模型的预测。ROCKET和KNeighborsTimeSeriesClassifier (TS-KNN)算法更适合ASD分类,因为它们通过丢弃ERG波形基线信号中不具有信息的非生理部分,并专注于包含ERG临床意义的a波和b波的时间段,提供了更好的解释。随着视觉电生理学在神经系统疾病中的应用范围的扩大,TSC可能支持识别ERG时间序列中的重要区域,从而支持神经系统疾病和潜在视网膜疾病的分类。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Time Series Classification of Autism Spectrum Disorder Using the Light-Adapted Electroretinogram.

The clinical electroretinogram (ERG) is a non-invasive diagnostic test used to assess the functional state of the retina by recording changes in the bioelectric potential following brief flashes of light. The recorded ERG waveform offers ways for diagnosing both retinal dystrophies and neurological disorders such as autism spectrum disorder (ASD), attention deficit hyperactivity disorder (ADHD), and Parkinson's disease. In this study, different time-series-based machine learning methods were used to classify ERG signals from ASD and typically developing individuals with the aim of interpreting the decisions made by the models to understand the classification process made by the models. Among the time-series classification (TSC) algorithms, the Random Convolutional Kernel Transform (ROCKET) algorithm showed the most accurate results with the fewest number of predictive errors. For the interpretation analysis of the model predictions, the SHapley Additive exPlanations (SHAP) algorithm was applied to each of the models' predictions, with the ROCKET and KNeighborsTimeSeriesClassifier (TS-KNN) algorithms showing more suitability for ASD classification as they provided better-defined explanations by discarding the uninformative non-physiological part of the ERG waveform baseline signal and focused on the time regions incorporating the clinically significant a- and b-waves of the ERG. With the potential broadening scope of practice for visual electrophysiology within neurological disorders, TSC may support the identification of important regions in the ERG time series to support the classification of neurological disorders and potential retinal diseases.

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来源期刊
Bioengineering
Bioengineering Chemical Engineering-Bioengineering
CiteScore
4.00
自引率
8.70%
发文量
661
期刊介绍: Aims Bioengineering (ISSN 2306-5354) provides an advanced forum for the science and technology of bioengineering. It publishes original research papers, comprehensive reviews, communications and case reports. Our aim is to encourage scientists to publish their experimental and theoretical results in as much detail as possible. All aspects of bioengineering are welcomed from theoretical concepts to education and applications. There is no restriction on the length of the papers. The full experimental details must be provided so that the results can be reproduced. There are, in addition, four key features of this Journal: ● We are introducing a new concept in scientific and technical publications “The Translational Case Report in Bioengineering”. It is a descriptive explanatory analysis of a transformative or translational event. Understanding that the goal of bioengineering scholarship is to advance towards a transformative or clinical solution to an identified transformative/clinical need, the translational case report is used to explore causation in order to find underlying principles that may guide other similar transformative/translational undertakings. ● Manuscripts regarding research proposals and research ideas will be particularly welcomed. ● Electronic files and software regarding the full details of the calculation and experimental procedure, if unable to be published in a normal way, can be deposited as supplementary material. ● We also accept manuscripts communicating to a broader audience with regard to research projects financed with public funds. Scope ● Bionics and biological cybernetics: implantology; bio–abio interfaces ● Bioelectronics: wearable electronics; implantable electronics; “more than Moore” electronics; bioelectronics devices ● Bioprocess and biosystems engineering and applications: bioprocess design; biocatalysis; bioseparation and bioreactors; bioinformatics; bioenergy; etc. ● Biomolecular, cellular and tissue engineering and applications: tissue engineering; chromosome engineering; embryo engineering; cellular, molecular and synthetic biology; metabolic engineering; bio-nanotechnology; micro/nano technologies; genetic engineering; transgenic technology ● Biomedical engineering and applications: biomechatronics; biomedical electronics; biomechanics; biomaterials; biomimetics; biomedical diagnostics; biomedical therapy; biomedical devices; sensors and circuits; biomedical imaging and medical information systems; implants and regenerative medicine; neurotechnology; clinical engineering; rehabilitation engineering ● Biochemical engineering and applications: metabolic pathway engineering; modeling and simulation ● Translational bioengineering
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