Ruiqin Zhong, Dayong Zhou, Dennis R Phillips, Earle R Adams, Bi-Cheng Wang, Zheng-Hua Ye
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Enzymatic activity assays of recombinant proteins of Arabidopsis and poplar GT61 members demonstrated that two of them, AtX2AT1 and PtrX2AT1, exhibited xylan 2-O-arabinosyltransferase activities specifically using UDP-Araf, two other ones, AtXYXT2/3, possessed xylan 2-O-xylosyltransferase activities specifically using UDP-Xyl, and three other ones, PtrXXAT1/2/3, were able to catalyze the transfer of 2-O-Araf and 2-O-Xyl onto xylan using both UDP-Araf and UDP-Xyl. Structural modeling and molecular docking of PtrXXAT1 identified amino acid residues involved in interacting with UDP-Araf and UDP-Xyl at the putative active site and site-directed mutagenesis revealed their critical roles in PtrXXAT1 catalytic activities. Furthermore, structural alignment and reciprocal swapping of UDP-Xyl-interacting residues of PtrXXAT1 with their corresponding residues of AtX2AT1 pinpointed key residues determining their nucleotide sugar donor specificity. 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引用次数: 0
摘要
植物细胞壁多糖糖基转移酶催化糖从特定的核苷酸糖供体转移到特定的受体底物上。它们的酶特异性是如何确定的机制是植物细胞壁生物学中长期存在的问题之一。本文研究了拟南芥和杨树GT61糖基转移酶参与木聚糖取代的生化功能,并研究了其核苷酸糖供体特异性的分子决定因素。对拟南芥和杨树GT61成员重组蛋白的酶活性测定表明,其中2个重组蛋白AtX2AT1和PtrX2AT1具有特异性使用UDP-Araf的木聚糖2- o -阿拉伯糖基转移酶活性,另外2个重组蛋白AtXYXT2/3具有特异性使用UDP-Xyl的木聚糖2- o -木基转移酶活性,另外3个重组蛋白PtrXXAT1/2/3能够同时使用UDP-Araf和UDP-Xyl催化2-O-Araf和2-O-Xyl转移到木聚糖上。PtrXXAT1的结构建模和分子对接发现了在推测的活性位点与UDP-Araf和UDP-Xyl相互作用的氨基酸残基,位点定向诱变揭示了它们在PtrXXAT1催化活性中的关键作用。此外,PtrXXAT1的udp - xyl相互作用残基与AtX2AT1的相应残基的结构比对和相互交换确定了决定其核苷酸糖供体特异性的关键残基。我们的研究结果表明,拟南芥和杨树GT61成员催化木聚糖的2-O-Araf和/或2- o -羟基取代,并且它们的底物结合袋的细微结构差异可能改变它们对核苷酸糖供体的底物特异性。
Deciphering the Biochemical Functions and Nucleotide Sugar Donor Specificity Determinants of Dicot GT61 Glycosyltransferases Involved in Xylan Substitutions.
Plant cell wall polysaccharide glycosyltransferases catalyze the transfer of sugars from specific nucleotide sugar donors onto specific acceptor substrates. The mechanisms of how their enzymatic specificity is determined is one of the long-standing questions in plant cell wall biology. In this report, we studied the biochemical functions of Arabidopsis and poplar GT61 glycosyltransferases involved in xylan substitutions and investigated the molecular determinants of their nucleotide sugar donor specificity. Enzymatic activity assays of recombinant proteins of Arabidopsis and poplar GT61 members demonstrated that two of them, AtX2AT1 and PtrX2AT1, exhibited xylan 2-O-arabinosyltransferase activities specifically using UDP-Araf, two other ones, AtXYXT2/3, possessed xylan 2-O-xylosyltransferase activities specifically using UDP-Xyl, and three other ones, PtrXXAT1/2/3, were able to catalyze the transfer of 2-O-Araf and 2-O-Xyl onto xylan using both UDP-Araf and UDP-Xyl. Structural modeling and molecular docking of PtrXXAT1 identified amino acid residues involved in interacting with UDP-Araf and UDP-Xyl at the putative active site and site-directed mutagenesis revealed their critical roles in PtrXXAT1 catalytic activities. Furthermore, structural alignment and reciprocal swapping of UDP-Xyl-interacting residues of PtrXXAT1 with their corresponding residues of AtX2AT1 pinpointed key residues determining their nucleotide sugar donor specificity. Our results indicate that Arabidopsis and poplar GT61 members catalyze 2-O-Araf- and/or 2-O-Xyl substitutions of xylan and that subtle structural differences in their substrate-binding pockets could alter their substrate specificity toward nucleotide sugar donors.
期刊介绍:
Plant & Cell Physiology (PCP) was established in 1959 and is the official journal of the Japanese Society of Plant Physiologists (JSPP). The title reflects the journal''s original interest and scope to encompass research not just at the whole-organism level but also at the cellular and subcellular levels.
Amongst the broad range of topics covered by this international journal, readers will find the very best original research on plant physiology, biochemistry, cell biology, molecular genetics, epigenetics, biotechnology, bioinformatics and –omics; as well as how plants respond to and interact with their environment (abiotic and biotic factors), and the biology of photosynthetic microorganisms.