Zainab O Mustapha, Eren H Ozturk, Benjamin E Lefkin, Diana Grajeda, Andrew J Nieuwkoop
{"title":"在105khz魔角旋转下测量全质子化蛋白的远距离接触。","authors":"Zainab O Mustapha, Eren H Ozturk, Benjamin E Lefkin, Diana Grajeda, Andrew J Nieuwkoop","doi":"10.1007/s10858-025-00477-8","DOIUrl":null,"url":null,"abstract":"<p><p>The use of <sup>1</sup>H detection, made possible by very fast magic-angle spinning (MAS), has revolutionized the field of biomolecular solid-state NMR. In the past, <sup>1</sup>H detection was often paired with deuteration schemes to achieve the highest possible resolution needed for protein structural characterization. However, with modern probes capable of MAS rates over 100 kHz, deuteration is no longer required, resulting in a need to measure long-range distances in fully protonated systems. In this study, we evaluate the potential of two 3D pulse sequences, (H)NCOH and (H)NCAH, to measure long-range C-H correlations in a fully protonated protein sample at a MAS rate of 105 kHz. Our results show that the (H)NCOH spectrum contains multiple sequential and structurally relevant long-range CO-H contacts for each residue, capturing H<sup>N</sup> contacts up to 6 Å despite transfers to side chain protons. Conversely, the (H)NCAH spectrum yields fewer Cα-H<sup>N</sup> correlations, with those present mostly from intraresidue aliphatic proton contacts. Therefore, in protonated proteins, the extensive <sup>1</sup>H network leads to dipolar truncation in the Cα-H experiment, while the CO-H correlations observed are comparable to those in deuterated samples. These findings highlight the feasibility of conducting distance measurements based on long-range cross polarization, on more accessible and affordable samples, expanding the scope of proton detection for systems where deuteration and back-exchange are not possible.</p>","PeriodicalId":613,"journal":{"name":"Journal of Biomolecular NMR","volume":" ","pages":""},"PeriodicalIF":1.9000,"publicationDate":"2025-09-26","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Measuring long-range contacts in a fully protonated protein at 105 kHz magic angle spinning.\",\"authors\":\"Zainab O Mustapha, Eren H Ozturk, Benjamin E Lefkin, Diana Grajeda, Andrew J Nieuwkoop\",\"doi\":\"10.1007/s10858-025-00477-8\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><p>The use of <sup>1</sup>H detection, made possible by very fast magic-angle spinning (MAS), has revolutionized the field of biomolecular solid-state NMR. In the past, <sup>1</sup>H detection was often paired with deuteration schemes to achieve the highest possible resolution needed for protein structural characterization. However, with modern probes capable of MAS rates over 100 kHz, deuteration is no longer required, resulting in a need to measure long-range distances in fully protonated systems. In this study, we evaluate the potential of two 3D pulse sequences, (H)NCOH and (H)NCAH, to measure long-range C-H correlations in a fully protonated protein sample at a MAS rate of 105 kHz. Our results show that the (H)NCOH spectrum contains multiple sequential and structurally relevant long-range CO-H contacts for each residue, capturing H<sup>N</sup> contacts up to 6 Å despite transfers to side chain protons. Conversely, the (H)NCAH spectrum yields fewer Cα-H<sup>N</sup> correlations, with those present mostly from intraresidue aliphatic proton contacts. Therefore, in protonated proteins, the extensive <sup>1</sup>H network leads to dipolar truncation in the Cα-H experiment, while the CO-H correlations observed are comparable to those in deuterated samples. These findings highlight the feasibility of conducting distance measurements based on long-range cross polarization, on more accessible and affordable samples, expanding the scope of proton detection for systems where deuteration and back-exchange are not possible.</p>\",\"PeriodicalId\":613,\"journal\":{\"name\":\"Journal of Biomolecular NMR\",\"volume\":\" \",\"pages\":\"\"},\"PeriodicalIF\":1.9000,\"publicationDate\":\"2025-09-26\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Journal of Biomolecular NMR\",\"FirstCategoryId\":\"99\",\"ListUrlMain\":\"https://doi.org/10.1007/s10858-025-00477-8\",\"RegionNum\":3,\"RegionCategory\":\"生物学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q3\",\"JCRName\":\"BIOCHEMISTRY & MOLECULAR BIOLOGY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Journal of Biomolecular NMR","FirstCategoryId":"99","ListUrlMain":"https://doi.org/10.1007/s10858-025-00477-8","RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q3","JCRName":"BIOCHEMISTRY & MOLECULAR BIOLOGY","Score":null,"Total":0}
Measuring long-range contacts in a fully protonated protein at 105 kHz magic angle spinning.
The use of 1H detection, made possible by very fast magic-angle spinning (MAS), has revolutionized the field of biomolecular solid-state NMR. In the past, 1H detection was often paired with deuteration schemes to achieve the highest possible resolution needed for protein structural characterization. However, with modern probes capable of MAS rates over 100 kHz, deuteration is no longer required, resulting in a need to measure long-range distances in fully protonated systems. In this study, we evaluate the potential of two 3D pulse sequences, (H)NCOH and (H)NCAH, to measure long-range C-H correlations in a fully protonated protein sample at a MAS rate of 105 kHz. Our results show that the (H)NCOH spectrum contains multiple sequential and structurally relevant long-range CO-H contacts for each residue, capturing HN contacts up to 6 Å despite transfers to side chain protons. Conversely, the (H)NCAH spectrum yields fewer Cα-HN correlations, with those present mostly from intraresidue aliphatic proton contacts. Therefore, in protonated proteins, the extensive 1H network leads to dipolar truncation in the Cα-H experiment, while the CO-H correlations observed are comparable to those in deuterated samples. These findings highlight the feasibility of conducting distance measurements based on long-range cross polarization, on more accessible and affordable samples, expanding the scope of proton detection for systems where deuteration and back-exchange are not possible.
期刊介绍:
The Journal of Biomolecular NMR provides a forum for publishing research on technical developments and innovative applications of nuclear magnetic resonance spectroscopy for the study of structure and dynamic properties of biopolymers in solution, liquid crystals, solids and mixed environments, e.g., attached to membranes. This may include:
Three-dimensional structure determination of biological macromolecules (polypeptides/proteins, DNA, RNA, oligosaccharides) by NMR.
New NMR techniques for studies of biological macromolecules.
Novel approaches to computer-aided automated analysis of multidimensional NMR spectra.
Computational methods for the structural interpretation of NMR data, including structure refinement.
Comparisons of structures determined by NMR with those obtained by other methods, e.g. by diffraction techniques with protein single crystals.
New techniques of sample preparation for NMR experiments (biosynthetic and chemical methods for isotope labeling, preparation of nutrients for biosynthetic isotope labeling, etc.). An NMR characterization of the products must be included.