建立聚合物接枝纳米颗粒炼金术多体相互作用模型的广义机器学习框架。

IF 5.5 1区 化学 Q2 CHEMISTRY, PHYSICAL
Melody Yiyuan Zhang, , , Shih-Kuang Alex Lee, , , Sharon C. Glotzer, , and , Rebecca K. Lindsey*, 
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引用次数: 0

摘要

聚合物接枝纳米颗粒(PGNs)作为高度可定制的构建模块,用于技术相关的自组装纳米材料。通过确定最佳PGN属性(如聚合物长度和接枝密度),以满足目标自组装结构,物理信息逆向设计策略对于加速探索大量相关设计空间至关重要。然而,他们的成功取决于对PGN相互作用如何随着粒子位置和物理属性的变化而变化的准确描述。我们引入了一个框架来满足这种需求。具体来说,我们开发了一个“炼金术”机器学习原子间模型(ML-IAM),该模型描述了PGN相互作用如何作为PGN间距离和可调PGN属性的函数同时变化。该模型是物理信息和明确的多体ChIMES ML-IAM的扩展。所得到的扩展ChIMES (X-ChIMES) ML-IAM在具有不同聚合物配体长度的PGNs的平均力势(PMF)数据上进行训练。我们通过将HOOMD-blue软件包中的正向反向操纵分子动力学增强采样方法与网格采样方案相结合,实现了有效的训练数据生成。我们展示了ChIMES为具有固定设计属性的pgn生成粗粒度(CG)模型的有效性,X-ChIMES的开发,以及它在使用HOOMD-blue和ChIMES计算器增强数字炼金术反设计模拟中的应用。这是ChIMES在CG系统建模中的首次应用,并结合了一种针对纳米材料自组装的逆设计方法。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

A Generalized Machine-Learning Framework for Developing Alchemical Many-Body Interaction Models for Polymer-Grafted Nanoparticles

A Generalized Machine-Learning Framework for Developing Alchemical Many-Body Interaction Models for Polymer-Grafted Nanoparticles

Polymer-grafted nanoparticles (PGNs) serve as highly customizable building blocks for technologically relevant self-assembled nanomaterials. Physics-informed inverse design strategies are crucial for expediting exploration of the massive associated design space by identifying optimal PGN attributes, such as polymer length and grafting density, to meet a target self-assembled structure. However, their success hinges on an accurate description of how PGN interactions vary as a function of both particle positions and physical attributes. We introduce a framework to meet this need. Specifically, we develop an “alchemical” machine-learned interatomic model (ML-IAM) that describes how PGN interactions vary as a function of both inter-PGN distances and tunable PGN attributes, simultaneously. This model is an extension of the physics-informed and explicitly many-bodied ChIMES ML-IAM. The resulting extended ChIMES (X-ChIMES) ML-IAM is trained on potential of mean force (PMF) data for PGNs with varied polymer ligand lengths. We enable efficient training data generation by combining the forward–reverse steered molecular dynamics enhanced sampling approach with a grid-sampling scheme in the HOOMD-blue software package. We demonstrate the efficacy of ChIMES for generating coarse-grained (CG) models for PGNs with fixed design attributes, development of X-ChIMES, and its application for enhancing digital alchemy inverse-design simulations using HOOMD-blue and the ChIMES Calculator. This is the first application of ChIMES in modeling CG systems and coupling with an inverse design method to target nanomaterial self-assembly.

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来源期刊
Journal of Chemical Theory and Computation
Journal of Chemical Theory and Computation 化学-物理:原子、分子和化学物理
CiteScore
9.90
自引率
16.40%
发文量
568
审稿时长
1 months
期刊介绍: The Journal of Chemical Theory and Computation invites new and original contributions with the understanding that, if accepted, they will not be published elsewhere. Papers reporting new theories, methodology, and/or important applications in quantum electronic structure, molecular dynamics, and statistical mechanics are appropriate for submission to this Journal. Specific topics include advances in or applications of ab initio quantum mechanics, density functional theory, design and properties of new materials, surface science, Monte Carlo simulations, solvation models, QM/MM calculations, biomolecular structure prediction, and molecular dynamics in the broadest sense including gas-phase dynamics, ab initio dynamics, biomolecular dynamics, and protein folding. The Journal does not consider papers that are straightforward applications of known methods including DFT and molecular dynamics. The Journal favors submissions that include advances in theory or methodology with applications to compelling problems.
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